Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq23068 98.7 8e-16 seq23925 82.4 6e-11 >seq23068 Length=17433 Score = 98.7 bits (108), Expect = 8e-16 Identities = 106/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 112401 ACGTTGCCTAGGTCACCGACGTGTCGCTCGGCGGCGTCGGGTGCGCCATGGT-CTTGGTT 112459 |||||||| ||||| |||||||| |||||| || |||| || |||| || | |||| Sbjct 17370 ACGTTGCCCAGGTCGCCGACGTGACGCTCGTCGTCGTCAGGGCCGCCGTGCTTCTTGC-- 17313 Query 112460 CGTGGGG-TTAAAATGCTCGCCCGCCGACGTGCACCCGTTGCTAGTGTCGCCAAACTCGT 112518 ||||||| ||||| ||| | || || | |||||||||| | |||| |||||||||| Sbjct 17312 CGTGGGGATTAAAGTGCGCACCGGCGCTCACGCACCCGTTGGTGTTGTCCCCAAACTCGT 17253 Query 112519 GCACGTGAAAACCGTGC 112535 | ||||| || |||||| Sbjct 17252 GGACGTGGAAGCCGTGC 17236 >seq23925 Length=43003 Score = 82.4 bits (90), Expect = 6e-11 Identities = 109/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 112390 CGACAGAGCGCACGTTGCCTAGGTCACCGACGTGTCGCTCGGCGGCGTCGGGTGCGCCAT 112449 || ||| | | |||||||| ||||| |||||||| || ||| || |||| || |||| | Sbjct 10116 CGTCAGCGAGGACGTTGCCCAGGTCGCCGACGTGACGTTCGTCGTCGTCAGGCCCGCCGT 10175 Query 112450 GGT-CTTGGTTCGTGGGG-TTAAAATGCTCGCCCGCCGACGTGCACCCGTTGCTAGTGTC 112507 | | |||| |||| || || || ||| | || || | |||||| ||| | |||| Sbjct 10176 GCTTCTTGC--CGTGAGGATTGAAGTGCGCACCGGCGCTCACGCACCCATTGGTGTTGTC 10233 Query 112508 GCCAAACTCGTGCACGTGAAAACCGTGC 112535 ||||||||||| ||||| || |||||| Sbjct 10234 CCCAAACTCGTGGACGTGGAAGCCGTGC 10261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425219078859760