Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq22879 127 1e-24 seq22211 105 4e-18 seq19772 102 5e-17 seq23480 98.7 7e-16 seq24030 96.9 2e-15 seq22955 93.3 3e-14 seq18924 93.3 3e-14 seq18730 87.8 1e-12 >seq22879 Length=6356 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| | | |||||||||| || |||||||| Sbjct 4667 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGGTGGTAGATAGGGACAGTGGGAATCTCGT 4608 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 4607 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 4573 Score = 105 bits (116), Expect = 4e-18 Identities = 71/79 (90%), Gaps = 3/79 (4%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 1922 CTCTCTTTTCAAAGTCCTTTTCACCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 1863 Query 20007 GGT---AATATTTAGCCTT 20022 | | ||||||||||||| Sbjct 1862 GCTGCCAATATTTAGCCTT 1844 >seq22211 Length=15201 Score = 105 bits (116), Expect = 4e-18 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 |||||||||||| ||||| || | || ||| |||| || | || || ||||| || Sbjct 4394 CTCCTTTTGAATGTTGTAGTCGGCCAGCGTACGACCGTCCTCAAGCTGCTTGCCGGCGAA 4335 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || ||||| || || |||| || | || || |||||| ||| || |||||||| || Sbjct 4334 GATGAGGCGCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTCTGCTTCACGTT 4275 Query 38246 CTGGACAGTAT--CTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTC 38303 || || |||| ||| || || ||||| | ||||| || ||||| ||||| || || Sbjct 4274 CTCGATGGTATCGCTCGAC--TCGACTTCGAGAGTAATGGTCTTACCGGTCAAAGTCTTG 4217 Query 38304 ACGAATATCTGCAT 38317 ||||| |||||||| Sbjct 4216 ACGAAGATCTGCAT 4203 >seq19772 Length=5961 Score = 102 bits (112), Expect = 5e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||||| || | || || || ||||||||||| ||||| || | | Sbjct 1324 CCACCACGCAGACGCAGTACGAGGTGGAGGGTTGATTCCTTTTGAATGTTGTAGTCGGCC 1383 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || | || || || || || || ||||| || || |||| ||| Sbjct 1384 AGGGTGCGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGAGGG 1443 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTAT--CTCCACTTTCAA 38268 | ||| || |||||| || || |||||||| || | || || | ||| || || | Sbjct 1444 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTTTCGATCGTGTCGCTCGAC--TCGA 1501 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | ||||| || |||||||||||||| || ||||| |||||||| Sbjct 1502 CTTCGAGAGTAATGGTCTTACCCGTCAAGGTCTTGACGAAGATCTGCAT 1550 >seq23480 Length=26370 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 || ||||| | || ||| | ||| | || || || |||||| || || ||||| || Sbjct 12551 TTGCCACCACGCAGACGGAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCG 12610 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 | | | || |||| || | || || ||||| || || || || || || |||| | Sbjct 12611 GCGAGAGTGCGGCCGTCCTCAAGCTGCTTACCGGCGAAGATAAGACGCTGCTGGTCGGGG 12670 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTAT--CTCCACTTT 38265 || | ||| || |||||| || || ||||||||||||| || |||| ||| || | Sbjct 12671 GGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTCTCGATGGTATCGCTCGAC--T 12728 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| | || || || |||||||| | ||| || ||||| |||||||| Sbjct 12729 CGACTTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 12780 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | || || | ||| | || ||||| |||||| || || ||||| || | Sbjct 13234 TACCTCCACGCAGGCGAAGCACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGG 13293 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | || |||| || | || || || || || || || || || ||||||| || Sbjct 13294 CAAGAGTGCGGCCGTCCTCGAGCTGCTTACCCGCGAAGATAAGACGCTGCTGATCGGGGG 13353 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || || |||||| || ||||||||||| |||| || ||||| || || | Sbjct 13354 GAATACCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATGGTATCCGAGCTCTCGA 13413 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || | || || || || || || | ||| |||||||| ||||||||||| Sbjct 13414 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATGTT 13465 >seq24030 Length=66970 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 || ||||| |||||||||||| ||||| |||| || || |||| || | || Sbjct 65988 TGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGCCAGGGTGCGGCCGTCCTCAAGCTGC 66047 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || || || || ||||| || || || | ||| | || || |||||| || || Sbjct 66048 TTGCCAGCGAAGATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTC 66107 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 |||||||| |||| || ||||| | | || ||||| | || || || || || ||| Sbjct 66108 TGCTTCACGTTCTCGATCGTATCGCTAGACTCGACTTCGAGGGTGATCGTCTTGCCAGTC 66167 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 ||||| || ||||| |||||||| Sbjct 66168 AAGGTCTTGACGAAGATCTGCAT 66190 >seq22955 Length=9686 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 |||||| || || ||||| || | || ||| |||| || | || || || || || Sbjct 7961 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTACCAGCGAA 8020 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || || || || || |||| ||| | ||| || |||||| || || ||||||||||| Sbjct 8021 GATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATT 8080 Query 38246 CTGGACAGTAT--CTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTC 38303 || || |||| ||| || || ||||| | || || || |||||||| | ||| || Sbjct 8081 CTCGATGGTATCGCTCGAC--TCGACTTCGAGGGTGATCGTCTTACCCGTGAGGGTCTTG 8138 Query 38304 ACGAATATCTGCAT 38317 ||||| |||||||| Sbjct 8139 ACGAAGATCTGCAT 8152 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | || ||| | ||| | || ||||| |||||| || || ||||| || | Sbjct 8380 TACCGCCACGCAGACGAAGCACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGG 8439 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | || |||| || | || || || || || || ||||| || || |||| || Sbjct 8440 CAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGGG 8499 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||| || |||||| || ||||||||||| || | || || || || || | Sbjct 8500 GAATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTTTCGATCGTGTCCGAGCTCTCGA 8559 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || | || || || || || || | ||| |||||||| ||||||||||| Sbjct 8560 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATGTT 8611 >seq18924 Length=24070 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 |||||| || || ||||| || | || ||| |||| || | || || || || || Sbjct 17795 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCAAGCTGCTTACCAGCGAA 17854 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || ||||| || || || | ||| | || || |||||| || ||||||||||| || Sbjct 17855 GATGAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTTTGCTTCACGTT 17914 Query 38246 CTGGACAGTAT--CTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTC 38303 || || |||| ||| || || ||||| | ||||| || |||||||| | ||| || Sbjct 17915 CTCGATGGTATCGCTCGAC--TCGACTTCGAGCGTAATGGTCTTACCCGTGAGGGTCTTG 17972 Query 38304 ACGAATATCTGCAT 38317 ||||| |||||||| Sbjct 17973 ACGAAGATCTGCAT 17986 >seq18730 Length=7279 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || || | ||| | || ||||| |||||| || || ||||| |||| Sbjct 350 CCACCACGCAGGCGAAGCACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCAGCG 291 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || | || || || || || || ||||| || || || | ||| Sbjct 290 AGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGGGGA 231 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTAT--CTCCACTTTCAA 38268 | || || |||||| || ||||||||||| |||| || |||| ||| || || | Sbjct 230 ATACCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATGGTATCGCTCGAC--TCGA 173 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | ||||| || || ||||| | ||| || ||||| |||||||| Sbjct 172 CTTCGAGCGTAATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334848827891438