Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq22211 125 6e-24 seq22955 122 8e-23 seq23826 98.7 9e-16 seq18924 95.1 1e-14 >seq22211 Length=15201 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||||||||| |||| || ||||||| |||||| Sbjct 4203 ATGCAGATCTTCGTCAAGACTTTGACCGGTAAGACCATTACTCTCGAAGTCGAGTCGAGC 4262 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || |||||| ||||||| || || ||||| || || ||||| || ||||| Sbjct 4263 GATACCATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAG 4322 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | || || | ||| || ||| ||| ||||| Sbjct 4323 CAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACGCTGGCCGACTACAAC 4382 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| || || || || || | ||||| Sbjct 4383 ATTCAAAAGGAGTCAACCCTCCACCTCGTGCT 4414 >seq22955 Length=9686 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||||||||| |||| || ||||||| |||||| Sbjct 8380 ATGCAGATCTTCGTCAAGACTTTGACCGGTAAGACCATTACTCTCGAAGTCGAGTCGAGC 8321 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || |||||| ||||||| || ||| ||||| || || ||||| || ||||| Sbjct 8320 GATACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAG 8261 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| |||| || ||||| || || | || || | ||| || | | ||| ||||| Sbjct 8260 CAGCGCCTTATCTTCGCCGGTAAGCAGCTTGAGGACGGTCGTACGCTTGCCGACTACAAC 8201 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || || || || | ||||| Sbjct 8200 ATCCAAAAGGAGTCAACCCTCCACCTCGTGCT 8169 >seq23826 Length=10614 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| ||||| |||| || ||||||| |||||| Sbjct 8521 ATGCAGATCTTCGTCAAGACTTTGACTGGTAAGACCATTACTCTCGAAGTCGAGTCGAGC 8580 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || |||||| ||||||| || ||| ||||| || || ||||| || ||||| Sbjct 8581 GATACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 8640 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || || || || | || || | || || | | ||| ||||| Sbjct 8641 CAGCGCCTCATCTTCGCGGGTAAGCAGCTTGAGGACGGCCGTACCCTTGCCGACTACAAC 8700 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || | ||||| Sbjct 8701 ATCCAGAAGGAGTCGACCCTCCACCTCGTGCT 8732 >seq18924 Length=24070 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || | ||||| ||||||| ||| || Sbjct 17758 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACGATCACCCTCGAAGTCGAGAGCTCG 17699 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||||| || ||| ||||| || || ||||| || ||||| Sbjct 17698 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAG 17639 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || || || || | || || | || || | | ||| ||||| Sbjct 17638 CAGCGCCTCATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGTACCCTCGCCGACTACAAC 17579 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || | ||||| Sbjct 17578 ATCCAGAAGGAGTCTACTCTCCACCTTGTGCT 17547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433200734003870