Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq23925 93.3 4e-14 seq23068 93.3 4e-14 >seq23925 Length=43003 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 107643 ACGTTGCCCAAATCGCCGACGTGACGCTCCGCGGCGTCGGGCGCGCCATGCTGCTGATG- 107701 |||||||||| |||||||||||||| || || |||| ||| |||| |||| || || Sbjct 10127 ACGTTGCCCAGGTCGCCGACGTGACGTTCGTCGTCGTCAGGCCCGCCGTGCTTCT--TGC 10184 Query 107702 CGT-AGGATTAAAGTGTTCGCCTGCCGACGTGCACCCATTGCTTGTGTCGCCAAATTCGT 107760 ||| |||||| ||||| | || || | |||||||||| | |||| ||||| |||| Sbjct 10185 CGTGAGGATTGAAGTGCGCACCGGCGCTCACGCACCCATTGGTGTTGTCCCCAAACTCGT 10244 Query 107761 GCACGTGAAAACCGTGC 107777 | ||||| || |||||| Sbjct 10245 GGACGTGGAAGCCGTGC 10261 >seq23068 Length=17433 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/157 (75%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 107632 CGACGGAGCGCACGTTGCCCAAATCGCCGACGTGACGCTCCGCGGCGTCGGGCGCGCCAT 107691 || ||| | | |||||||||| ||||||||||||||||| || |||| || |||| | Sbjct 17381 CGTCGGCGAGGACGTTGCCCAGGTCGCCGACGTGACGCTCGTCGTCGTCAGGGCCGCCGT 17322 Query 107692 GCTGCTGATG-CGT-AGGATTAAAGTGTTCGCCTGCCGACGTGCACCCATTGCTTGTGTC 107749 ||| || || ||| ||||||||||| | || || | |||||| ||| | |||| Sbjct 17321 GCTTCT--TGCCGTGGGGATTAAAGTGCGCACCGGCGCTCACGCACCCGTTGGTGTTGTC 17264 Query 107750 GCCAAATTCGTGCACGTGAAAACCGTGCAAGCCGCGC 107786 ||||| ||||| ||||| || |||||| |||| || Sbjct 17263 CCCAAACTCGTGGACGTGGAAGCCGTGCTGGCCGGGC 17227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422915755531600