Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq23741 158 2e-33 seq24076 87.8 4e-12 seq23813 87.8 4e-12 seq23727 87.8 4e-12 seq23605 87.8 4e-12 seq23446 87.8 4e-12 seq23097 87.8 4e-12 seq22779 87.8 4e-12 seq22606 87.8 4e-12 seq22115 87.8 4e-12 seq20313 87.8 4e-12 seq19001 87.8 4e-12 seq18548 87.8 4e-12 >seq23741 Length=113318 Score = 158 bits (174), Expect = 2e-33 Identities = 397/594 (67%), Gaps = 12/594 (2%) Strand=Plus/Minus Query 251554 ACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAG 251613 || ||||| |||||||| || | ||||||||| || ||||| |||||||| || ||| Sbjct 78600 ACCCGGCGCTCGAAGAAGTTGGTCTTGCCCTCAAGCGAGATGAGCTCCATCCAGGGGAAC 78541 Query 251614 GGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACA 251673 ||||| || ||| | ||||| ||| || || |||| | || || || ||| Sbjct 78540 GGGTTGGTACTGTTGAAGTGCTTCTCGCAGCCGAGAGCGACGAGCAGACGATCGGCGACA 78481 Query 251674 AACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGC 251732 ||||| | ||||| | ||| || | | ||||||||| || | |||| ||| | Sbjct 78480 AACTCGATGTACTGGCACATGAGGTTGGCGTTCATGCCGATGAGCGCGACGGGGAGC-GA 78422 Query 251733 CTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAAT-TGCCTTCACCTGTG 251791 |||| || ||| ||||| || | | || |||||| | || ||| | | || Sbjct 78421 CTCAGTGACGAACTCCTTCTCAATCTCGACGGCCTCCAGGATGATCTGCTTGGGCACGTC 78362 Query 251792 CCAGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGAC 251851 | || | | ||||||| | ||| | ||| ||||| |||| | ||| |||| Sbjct 78361 CGAG-GTCGGCTTGTTGACGAGCATGCTGTAGAGGAGGCAAGCAAAGTCGCAGTGAAGAC 78303 Query 251852 CCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCC 251911 |||| ||||| ||||||| |||||| || | | || |||||||| | || || ||| Sbjct 78302 CCTCATCGCGGCTGATGAGCTCGTTCGAGAAGGCAAGACCAGGCATGAGGCCGCGCTTCT 78243 Query 251912 TGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATG 251971 ||||||||||||| ||||| ||||| |||||||| | | ||||||||| | | Sbjct 78242 TGAGCCAGAAGATGGCGCAGAAGGAGCCAGAGAAGAAGATGCCCTCGACAGCGGCGAAGC 78183 Query 251972 CAACAAGGCGCTCAGCAAA-----CGAC-TTGTCCTGCGACAAGAACTTCTGTGCCCATG 252025 | || || ||||| ||||| |||| ||||| | | ||||| | ||||| Sbjct 78182 CGACCAGACGCTCCGCAAAGGTCTCGACGCCGTCCTTGGCAATCCACTTCAGGGCCCACT 78123 Query 252026 CTGCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCC-GCTCG 252084 | |||||||| |||| || | || ||||| ||| || || | | ||| ||| Sbjct 78122 CCGCCTTCTTCTTGACCGAGGCCACCGTCTCGATGGCACGGAACAG-GCGATCCTTCTCC 78064 Query 252085 GCATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138 | |||||| | | || || | |||||| |||||||| ||||| || ||| Sbjct 78063 ACCGCGTCCTTTACGTACGTGTCGATCAGGAGCGAGTACATTTCCGAGTGAATG 78010 >seq24076 Length=119838 Score = 87.8 bits (96), Expect = 4e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| || ||||||| || ||||||||||||||||||||||| Sbjct 67887 TAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 67830 Score = 87.8 bits (96), Expect = 4e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| || ||||||| || ||||||||||||||||||||||| Sbjct 68372 TAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 68315 >seq23813 Length=119519 Score = 87.8 bits (96), Expect = 4e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| || ||||||| || ||||||||||||||||||||||| Sbjct 43815 TAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 43758 >seq23727 Length=11646 Score = 87.8 bits (96), Expect = 4e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| || ||||||| || ||||||||||||||||||||||| Sbjct 1377 TAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 1434 >seq23605 Length=33005 Score = 87.8 bits (96), Expect = 4e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| || ||||||| || ||||||||||||||||||||||| Sbjct 31952 TAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 31895 >seq23446 Length=44718 Score = 87.8 bits (96), Expect = 4e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| || ||||||| || ||||||||||||||||||||||| Sbjct 39046 TAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 38989 >seq23097 Length=13173 Score = 87.8 bits (96), Expect = 4e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| || ||||||| || ||||||||||||||||||||||| Sbjct 2989 TAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 3046 >seq22779 Length=22469 Score = 87.8 bits (96), Expect = 4e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| || ||||||| || ||||||||||||||||||||||| Sbjct 13825 TAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 13882 Score = 87.8 bits (96), Expect = 4e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| || ||||||| || ||||||||||||||||||||||| Sbjct 15933 TAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 15876 >seq22606 Length=80227 Score = 87.8 bits (96), Expect = 4e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| || ||||||| || ||||||||||||||||||||||| Sbjct 29422 TAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 29479 Score = 87.8 bits (96), Expect = 4e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| || ||||||| || ||||||||||||||||||||||| Sbjct 29575 TAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 29632 Score = 87.8 bits (96), Expect = 4e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| || ||||||| || ||||||||||||||||||||||| Sbjct 31194 TAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 31137 >seq22115 Length=12316 Score = 87.8 bits (96), Expect = 4e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| || ||||||| || ||||||||||||||||||||||| Sbjct 10651 TAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 10708 Score = 87.8 bits (96), Expect = 4e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| || ||||||| || ||||||||||||||||||||||| Sbjct 11344 TAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 11287 >seq20313 Length=8778 Score = 87.8 bits (96), Expect = 4e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| || ||||||| || ||||||||||||||||||||||| Sbjct 8514 TAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 8457 >seq19001 Length=13178 Score = 87.8 bits (96), Expect = 4e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| || ||||||| || ||||||||||||||||||||||| Sbjct 7354 TAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 7411 Score = 87.8 bits (96), Expect = 4e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| || ||||||| || ||||||||||||||||||||||| Sbjct 7505 TAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 7562 >seq18548 Length=20962 Score = 87.8 bits (96), Expect = 4e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| || ||||||| || ||||||||||||||||||||||| Sbjct 205 TAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027519449606418