Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq18924 120 3e-22 seq22211 118 9e-22 seq23826 113 4e-20 seq19772 109 5e-19 seq22955 107 2e-18 seq24030 98.7 8e-16 seq23603 98.7 8e-16 seq23480 95.1 1e-14 seq20601 89.7 4e-13 seq16600 89.7 4e-13 >seq18924 Length=24070 Score = 120 bits (132), Expect = 3e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || || || |||||||| ||| Sbjct 17985 ATACCACCACGAAGGCGAAGCACGAGGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCG 18044 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||||| || || ||||||||| ||||||| ||||| ||||| ||| Sbjct 18045 GCGAGGGTGCGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCGGGA 18104 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| ||||| |||||||| || | | || | ||||||| ||| ||| Sbjct 18105 GGGATGCCTTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTCGGAGGACTCG 18164 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || || | || | || |||||||| || || || || || |||||||||||| Sbjct 18165 ACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATGGCT 18218 >seq22211 Length=15201 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || |||||||||||||| ||| Sbjct 4432 ATACCTCCACGCAGGCGGAGCACGAGGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCG 4373 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| || ||||| || || || ||| ||||||| ||||| ||||| ||| Sbjct 4372 GCCAGCGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGA 4313 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| |||||| || || | | || | ||| ||| | || ||| Sbjct 4312 GGAATACCCTCCTTGTCCTGAATCTTCTGCTTCACGTTCTCGATGGTATCGCTCGACTCG 4253 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || ||||||| ||| || || || |||||||| Sbjct 4252 ACTTCGAGAGTAATGGTCTTACCGGTCAAAGTCTTGACGAAGATCTGCAT 4203 >seq23826 Length=10614 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | | || | || | || || || || || |||||||| ||| Sbjct 8522 ATACCGCCACGCAGACGAAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCG 8463 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || || || || || ||||| ||| |||| |||||||| || || || Sbjct 8462 GCAAGAGTGCGGCCGTCCTCGAGCTGCTTACCCGCGAAGATAAGACGCTGCTGATCGGGG 8403 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| |||||||| || | | ||| | |||||| | ||| ||| Sbjct 8402 GGAATACCCTCCTTGTCCTGGATCTTTTGCTTCACGTTTTCGATGGTGTCCGAGGACTCG 8343 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||| |||||||| || || || || || |||||||| Sbjct 8342 ACCTCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 8293 >seq19772 Length=5961 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || || |||||||| || | || || || ||||| || |||||| Sbjct 1810 GTAGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTCAAGCTGCTTACCA 1869 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| ||||| || ||||| || || ||||| |||||||| || Sbjct 1870 GCGAAGATGAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTTTGCTTC 1929 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | ||| ||||| || | ||| | || |||||||| || || Sbjct 1930 ACGTTCTCGATCGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTC 1989 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 1990 TTCACGAAGATCTGCATG 2007 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| |||||||||||||| ||| || || || ||||| || || || ||| Sbjct 1354 GTTGATTCCTTTTGAATGTTGTAGTCGGCCAGGGTGCGGCCGTCTTCGAGCTGCTTGCCA 1413 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| ||||| ||||| ||||| ||||| || ||||| ||||| || || Sbjct 1414 GCGAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 1473 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | |||||| | || ||||| || | || | || || || |||| || Sbjct 1474 ACGTTTTCGATCGTGTCGCTCGACTCGACTTCGAGAGTAATGGTCTTACCCGTCAAGGTC 1533 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 1534 TTGACGAAGATCTGCAT 1550 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | | || | || | || || || || || |||||||| ||| Sbjct 1549 ATACCGCCACGAAGACGGAGCACGAGGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCG 1608 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||||| || ||||| || || |||||| ||||||| ||||| ||||| || Sbjct 1609 GCCAGGGTACGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCAGGG 1668 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| ||||| || || | | || | || ||| | || ||| Sbjct 1669 GGAATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTATCGCTCGACTCG 1728 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || ||||| || || || || || |||||||| Sbjct 1729 ACTTCGAGCGTGATGGTCTTACCGGTGAGGGTCTTGACGAAGATCTGCAT 1778 >seq22955 Length=9686 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || ||||| || || || || |||||| Sbjct 7956 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTACCA 8015 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| ||||| || |||||||| || ||||| ||||| || || Sbjct 8016 GCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTC 8075 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||| ||| | || ||||| || | ||| | ||| || || || || || Sbjct 8076 ACATTCTCGATGGTATCGCTCGACTCGACTTCGAGGGTGATCGTCTTACCCGTGAGGGTC 8135 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 8136 TTGACGAAGATCTGCAT 8152 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | | || | || | || || || || || |||||||| ||| Sbjct 8379 ATACCGCCACGCAGACGAAGCACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCG 8438 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || || || || || || |||||| ||||||| ||||| ||||| || Sbjct 8439 GCAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGG 8498 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| |||||||| || | | ||| | ||||| | | ||| Sbjct 8499 GGAATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTTTCGATCGTGTCCGAGCTCTCG 8558 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || |||||||| || || || || || ||||||||| Sbjct 8559 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATG 8609 Score = 95.1 bits (104), Expect = 1e-14 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || ||||| || || || || || || Sbjct 7693 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTGCCG 7752 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| |||||||| ||||| || ||||| || || ||||| ||||||||||| Sbjct 7753 GCGAAGATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTTTGTTTA 7812 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCA 114360 | | || | ||| ||| | || ||||| || | ||| | ||| |||||||||| Sbjct 7813 ACGTTCTCGATGGTATCGCTCGACTCGACCTCAAGGGTGATCGTCTTGCCGGTCA 7867 >seq24030 Length=66970 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || |||||||||||||| || || || || || ||||| || || ||| Sbjct 65994 GTAGACTCCTTTTGAATGTTGTAGTCAGCCAGGGTGCGGCCGTCCTCAAGCTGCTTGCCA 66053 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || ||||| ||||| || ||||| || || ||||| ||||| || || Sbjct 66054 GCGAAGATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTC 66113 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | || ||| | || ||||| || | ||| | ||| ||||| |||| || Sbjct 66114 ACGTTCTCGATCGTATCGCTAGACTCGACTTCGAGGGTGATCGTCTTGCCAGTCAAGGTC 66173 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 66174 TTGACGAAGATCTGCAT 66190 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || || || || || |||||| ||||||||||||| ||||| || ||||| || || ||| Sbjct 66264 TCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGGGGAATACCCTCCTTG 66323 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || ||||| || || | | ||| | ||||| | ||| ||||| || | ||| | Sbjct 66324 TCCTGGATCTTCTGCTTCACGTTTTCGATCGTGTCAGAGGACTCGACCTCGAGGGTGATG 66383 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||||||| || || || || || |||||||| Sbjct 66384 GTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 66418 >seq23603 Length=18425 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | | || | || | || || || || || |||||||| || Sbjct 253 ATACCGCCACGAAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 312 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || ||||| || || || ||| ||||||| ||||| ||||| ||| Sbjct 313 GCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGA 372 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| |||||||| || | | || | ||||| | ||| ||| Sbjct 373 GGAATACCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTCAGAGGACTCG 432 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || || | ||| | || || || || || || || || || |||||||||||| Sbjct 433 ACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCATGGCT 486 >seq23480 Length=26370 Score = 95.1 bits (104), Expect = 1e-14 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| | || || || ||||| || || ||| Sbjct 12812 GTCGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCA 12871 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| ||||| ||||| || ||||||||||| ||||| ||||| || || Sbjct 12872 GCGAAGATGAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTCTGCTTC 12931 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCA 114360 | | || | ||| ||| | || ||||| || | ||| | ||| |||||||||| Sbjct 12932 ACGTTCTCGATGGTATCGCTCGACTCGACCTCAAGGGTGATCGTCTTGCCGGTCA 12986 >seq20601 Length=65372 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 ||||| | || | ||| | |||||| ||||| || ||| |||||||| | || || Sbjct 57620 AGTCTGAGGACAAGATGGAGCGTAGACTCTTTGCTAAGGTTATAATCGCTGAGAGAGCGG 57679 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 |||||||| || | ||| | |||| | ||||||||||||||| ||||| || || Sbjct 57680 CTGTCTTCAAGCTGCTGGCCACCAAAGATTATACGCTGTTGGTCCGGCGGAATACCCTCC 57739 Query 114285 TTGTC-GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGT 114343 ||||| | | || | ||||| | ||||||||||| || | |||| || | || Sbjct 57740 TTGTCTTGGAGTC-TCTGTTTGACTTGTTCAACGGTATCACCTGGCTCGAACTCGATCGT 57798 Query 114344 CACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTG 114379 | || ||||| || ||||| || || || ||||| Sbjct 57799 GATGGTCTTGCCAGTGAGAGTCTTAACGAACATCTG 57834 >seq16600 Length=130 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || |||||| ||||| || || || ||| Sbjct 111 GTTGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGACCGTCTTCGAGCTGCTTGCCA 52 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||| ||||||||||||| ||||| ||||| |||||||| ||||| Sbjct 51 GCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420011008889976