Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq22211 91.5 1e-13 seq19772 82.4 6e-11 >seq22211 Length=15201 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | ||| || ||||| || || || || |||||| ||||||||||| || || Sbjct 4430 ACCTCCACGCAGGCGGAGCACGAGGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGC 4371 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || |||| || | ||||||||||| || || ||||||||||| || || Sbjct 4370 CAGCGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGG 4311 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGC 34078 | | ||| |||||| ||| || ||||| | | ||| | |||| | || ||| Sbjct 4310 AATACCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTCTCGATGGTATCGCTCGACTCGA 4252 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||||| || || || || ||||| | || || || ||||| ||||| Sbjct 4251 CTTCGAGAGTAATGGTCTTACCGGTCAAAGTCTTGACGAAGATCTGCAT 4203 >seq19772 Length=5961 Score = 82.4 bits (90), Expect = 6e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||| || || || || ||||||||| |||||||| || |||| || Sbjct 1561 AGACGGAGCACGAGGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGG 1620 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | |||||||| || || || ||||||||||| || || | | ||| Sbjct 1621 CCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCAGGGGGAATACCCTCC 1680 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| || || ||||| | | ||| | |||| | || ||| ||||| ||| Sbjct 1681 TTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATCGTATCGCTCGACTCGACTTCGAGCGT 1739 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || ||||| || || || || ||||| ||||| Sbjct 1740 GATGGTCTTACCGGTGAGGGTCTTGACGAAGATCTGCAT 1778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396945785006596