Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq23741 116 8e-21 >seq23741 Length=113318 Score = 116 bits (128), Expect = 8e-21 Identities = 286/431 (66%), Gaps = 6/431 (1%) Strand=Plus/Plus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 ||||| |||||||| |||| || | || || || || | || || || ||| Sbjct 78164 TTTGCGGAGCGTCTGGTCGGCTTCGCCGCTGTCGAGGGCATCTTCTTCTCTGGCTCCTTC 78223 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||| ||||| ||| || | |||||||| || | | || |||||| Sbjct 78224 TGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTTGCCTTCTCGAACGAG 78283 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468 ||||||| ||||| ||||| |||||| | || | | || | || | |||| Sbjct 78284 CTCATCAGCCGCGATGAGGGTCTTCACTGCGACTTTGCTTGCCTCCTCTACAGCATGCTC 78343 Query 243469 CAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAA 243528 ||||||| | | || | ||| || |||||| || || || || | || Sbjct 78344 GTCAACAAGCCGACCTCGGACGTGCCCAAGCAGATCATCCTGGAGGCCGTCGAGATTGAG 78403 Query 243529 AAGGAATTCATT--TGCGACGCTATTCCATGCCG-GCTTATTGGCATGAACTCTGAACTC 243585 ||||| ||| | || | |||| || | || ||| || ||||||||| | | ||| Sbjct 78404 AAGGAGTTCGTCACTGAGTCGCT---CCCCGTCGCGCTCATCGGCATGAACGCCAACCTC 78460 Query 243586 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAA 243645 ||| | ||||||||||| || || ||||| || | || |||| || || | ||||| Sbjct 78461 ATGTGCCAGTACATCGAGTTTGTCGCCGATCGTCTGCTCGTCGCTCTCGGCTGCGAGAAG 78520 Query 243646 GTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACT 243705 | |||| | ||||| || ||| ||||||||||| |||||| | || || || Sbjct 78521 CACTTCAACAGTACCAACCCGTTCCCCTGGATGGAGCTCATCTCGCTTGAGGGCAAGACC 78580 Query 243706 AACTTCTTCGA 243716 ||||||||||| Sbjct 78581 AACTTCTTCGA 78591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102539479596300