Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq19361 262 5e-65 seq23003 250 3e-61 seq23741 147 3e-30 seq23882 107 2e-18 seq20001 100 3e-16 >seq19361 Length=29087 Score = 262 bits (290), Expect = 5e-65 Identities = 1113/1739 (64%), Gaps = 53/1739 (3%) Strand=Plus/Plus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 || ||||||||||| || |||||||| |||| ||| || || | |||||||| | Sbjct 13300 CGAAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAAGCGTAGAAGTGCATCGAAGTG 13359 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716 | ||||| || | || | ||||| ||| ||| | ||| || |||||| | Sbjct 13360 AGCTTGGCGAAGGAAGGCTCTCCCATGTAGATGTTGAGCGACTGGCTCTGGTCGATGTA- 13418 Query 113717 CGTCCA---CGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTT 113773 | || || || || ||||| || || || | | | || ||||||||||| Sbjct 13419 --TGCAGAGCGGTCGGCGGCCATGTCGATGACGACGCGCTGCGGAATCTCCCACACAGTC 13476 Query 113774 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCC 113833 |||| || ||||| | ||||| ||||| || |||| || || | |||||| Sbjct 13477 TTGTACAGCTTCTTGAGGTCATCAGGGATCTCGTCGATGTTCTGCACGGAGCCGTTG--- 13533 Query 113834 TTGACCATGAGATCCTTCATAT---CCTTTGACCAGAGACCAATCTTTTTGAGATCCTCC 113890 | | ||| ||| | ||| || | ||||| | || || | || || Sbjct 13534 TGGGCCACGAGTTTGTTCTTAAGGGCGGCCGACCACAAGCCTCGCTCCATCAGGTCGCGG 13593 Query 113891 ACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTG 113950 | ||| |||| ||||| || || || ||||| || |||| | ||||| ||| Sbjct 13594 AGGAGGTGCTCGTTGACGACGGTGAAGTCGCCCGCAAGAATGCGACGTGTGTAGATGTTG 13653 Query 113951 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGC 114010 | ||||| ||||| |||||||| ||||| || | || || | |||||| ||||| ||| Sbjct 13654 GAGGTGTACGGCTCGAAGCACTCGTTGTTGCCGAGAATCTGAGAGGTGGATGCTGTAGGC 13713 Query 114011 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCG 114070 |||||||||| ||| ||| ||| | ||| || | | ||| | ||||| Sbjct 13714 ATGGGTGCCACGAGGAGGGAGTTCCTGAGGCCGTGCTGAGCGATGTTGGCACGGAGGGTA 13773 Query 114071 TCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATA--TCAAACTGGAGGATACCTT 114128 ||||||| | || | | |||| || | || |||||| | || | Sbjct 13774 GCCCAGTCCCACCTGTCCGAGGGGGTAA--TGCCCCAGAGGTCGGGCTGGAGCTTGCCCT 13831 Query 114129 GGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCA----ATTCG 114184 ||| |||||||| ||| | |||| ||| | |||| ||| |||| ||| | Sbjct 13832 CGGAAGCTGGCGAGCCCGCGTATGTAGGGTAAGTACCCTGCTCCTTGGCCATCTCATTAG 13891 Query 114185 GAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAAT-GCGAGCATTCATTGCCTT 114243 ||| ||| || |||| || || ||||| || || ||| | ||| | | Sbjct 13892 AAGCAGT----GAGTGCAGCGTAGTAGATGGTCTCGAAGATAGCGCG-ATTGAGCTCGCG 13946 Query 114244 GGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGAC 114303 |||||| | | || | | | || | || || || || || ||||| || || Sbjct 13947 GGCCTCCTGGCTCTCCCATGGGCAGCGCATGAGCATGAAGACGTCGGCAAGACCCTGAAC 14006 Query 114304 ACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACG---GGATA 114360 ||| || || || ||||| || | ||| || || || || || ||| | | ||||| Sbjct 14007 ACCAAGACCGATCGGGCGGTGACGCATGTTCGAGTTGCGGGC---CTCAATGACTGGATA 14063 Query 114361 AAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAG 114420 | || | ||||| ||| | || || || ||||| ||||| | || ||| Sbjct 14064 GTAGTTGATGTCGATCACCTTGTTGAGGTTGCGCGTGACGACCTTGACCACGTCGAAAAG 14123 Query 114421 CTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGC 114480 ||| | || ||| || ||| || | | ||| ||||| ||||| |||| ||||| Sbjct 14124 CTTCTTGTGATCGAA-CTGGCCGT----TGAC-GACGTACTTCGGAAGAGCGAGCGACGC 14177 Query 114481 CAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT 114540 || || ||||| | | |||||| | ||| ||| || | ||||| ||||| || Sbjct 14178 GAGGTTGCACACTGCGACCTCATCAGGAGACGTGAACTGAATGACCTCCGTGCACAAGTT 14237 Query 114541 TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTA 114600 || || |||||||| | || || || || ||||| | || |||| |||||||| Sbjct 14238 CGAGGACTGGATGGTGCCGAGGTGCTGCTGGTTCGACTTGGCATTGCACGAGTCCTTGTA 14297 Query 114601 AAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGC 114660 ||| ||||| ||||| || ||||| | || || | |||||| | ||| | || Sbjct 14298 AAGGATGTAAGGCGTGCCGGTCTCGATCTGTGATTCGAGAATGGAGAACCACAGCTCCTG 14357 Query 114661 GGC--TGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCA 114718 ||| || | | |||| || || ||||| | |||||| ||| |||| Sbjct 14358 GGCCTTGACGACGCGGCGA--GCGCGTCCCTCATTCTCGTAGCGCACGTACTTCTCTTCG 14415 Query 114719 AACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCAT 114778 ||||| |||||| | ||| |||| || || || | | || |||||||| ||||| Sbjct 14416 AACTCCTCACCCCAGCACTCGAAGAGGCCGGGCGCTTCGTTGGGACAGAAGAGCGACCAA 14475 Query 114779 TGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGA 114838 | || || ||||||| ||||||||||| ||||| || | ||| || | |||||||| Sbjct 14476 TCGCCTCCGGCCTCAACGCGCTTCATGAACAGGTCCGGCACCCACAGGCCGTAGAAGAGA 14535 Query 114839 TCCCGACAGCGAGCTTCT--TCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGA 114896 || ||| ||| | |||| || | || || || | ||| | || || | || Sbjct 14536 TCACGA--GCGCGGTTCTCCTCCTTGCCATGGTTCTTCTTGAGCTCAAGGAAATCGAAGA 14593 Query 114897 TATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGA---CGACCAGCCT 114953 |||| ||||||||||| ||||| || | ||||| | |||||||| | ||| ||| Sbjct 14594 TATCGGCGTGCCACGGCTCCAGATAGATCGCGAACGCTCCCTTACGCTTGCCACCGCCCT 14653 Query 114954 GGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATT 115013 | | || || | || || | || | || |||||||| || |||| |||| || Sbjct 14654 GATCAACGTAGCGAGCGGTATCGTTGTAGACACGAAGCATGGGGATGAGTCCATTCGACG 14713 Query 115014 GGCCATTTGTCCCCCGAAT--ACGAGACTTATTGGCTCTGACATCATGGATGTGCATACC 115071 || || || || || || ||||| || || | || || | | | || Sbjct 14714 TTCCGTTGGTGCCGCGGATGTACGAG--TTCGAAGCGCGGATGCGGTGAACGGCAACTCC 14771 Query 115072 AATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTC 115131 ||| || || || |||| ||||| | ||||||| | |||| || ||||||| || || Sbjct 14772 AATGCCACCGGCAGACTTGGAGATGAGAGCGCACTGCTTGAGCGTGTCGTAGATGCCCTC 14831 Query 115132 GATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACC 115191 ||| ||||| |||| | | || |||||||| ||||| || || | || || || Sbjct 14832 GATGGAGTCCTCCTTCATCGTGAGCAGGAAGCACGACGACAGCTGCGGACGAGGCGTGCC 14891 Query 115192 AGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGT 115251 ||||||||||| || || || ||||| |||| | || || | |||||| || Sbjct 14892 CGCGTTGAAGAGAGTAGGAGTGGCGTGCGTGAAGAGCTGCTGCGAGAGGAGATCGTATGT 14951 Query 115252 CTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGT 115310 ||||| |||||||| |||| ||| ||||| |||| | ||||| ||| | ||||| Sbjct 14952 CTCCAGCACGGCGGGGATGTTGTCCGTGTGAAGGCCGACGGCGACCCTCATGAGCATGT 15010 >seq23003 Length=12893 Score = 250 bits (276), Expect = 3e-61 Identities = 1152/1807 (64%), Gaps = 43/1807 (2%) Strand=Plus/Minus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 |||||||||||||| || |||||||| |||| ||| || || | |||||||| | Sbjct 2373 CGGAGGTAGTACATGCCAGTCTTGAGGCCCTTGCGCCAAGCGTAGAAGTGCATCGAAGTG 2314 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716 | ||||| || | || ||||| ||| ||| | ||| ||||||||| | Sbjct 2313 AGCTTGGCGAAGGAAGGCTCGCCCATGTAGATGTTGAGGGACTGGCTCTGATCGATGTA- 2255 Query 113717 CGTCCA-CGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCT 113775 || | ||||| || ||||| || || || | | | || ||||||||||| | Sbjct 2254 CGCAGAGCGATCGGCAGCCATGTCGATGACTACGCGCTGCGGAATCTCCCACACAGTCTT 2195 Query 113776 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTT 113835 ||| || ||||| | |||||| ||||| || |||| || || | ||||| | | Sbjct 2194 GTACAGCTTCTTGAGATCATCGGGGATCTCGTCGATGTTCTGCACTGAGCC----GTTGT 2139 Query 113836 GACC-ATGAGATCCTTCATAT---CCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCA 113891 || | | ||| | ||| | | ||||| | || || | || || | Sbjct 2138 GAGCGACGAGTTTGTTCTTGAGGGCGGCCGACCACAAGCCTCGCTCCATCAGGTCGCGGA 2079 Query 113892 CGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGG 113951 ||| |||| ||||| || || || || || || |||| | |||||||||| Sbjct 2078 GGAGGTGCTCGTTGACGACGGTGAAGTCGCCGGCAAGAATGCGACGTGTGTAGATATTGG 2019 Query 113952 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCA 114011 ||||| ||||| |||||||| ||||| || | || || | |||||| || || |||| Sbjct 2018 AGGTGTACGGCTCGAAGCACTCGTTGTTGCCAAGAATCTGTGAGGTGGATGCCGTAGGCA 1959 Query 114012 TGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGT 114071 |||| |||| ||| ||| ||| | |||||| | | ||| | ||||| Sbjct 1958 TGGGCGCCACGAGGAGGGAGTTCCTGAGACCGTGCTGAGCGATGTTGGCACGGAGGGTAG 1899 Query 114072 CCCAGTCGTAGTTGAGCTTTG---TCTCCCCCTGCCACATATCAAACTGGAGGATACCTT 114128 ||||||| | || | | | | ||| || | ||| ||||| | || | Sbjct 1898 CCCAGTCCCACCTGTCCGAGGGAGTAACACCC---CAGAGATCGGGTTGGAGCTTGCCCT 1842 Query 114129 GGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGC 114188 ||| || ||||| || || | || ||| | ||||| ||| |||| ||| | Sbjct 1841 CGGAAGCCGGCGAGCCAGCATACGTAGGGTAGGTGCCCTGCTCCTGGGCCATCTCGTTGG 1782 Query 114189 TCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAAT-GCGAGCATTCATTGCCTTGGCC 114247 || ||| || |||| || || ||||| || || ||| | ||| | | |||| Sbjct 1781 AAGCAGTGAGTGCGGCGTAGTAGATGGTCTCGAAGATAGCGCG-ATTGAGCTCGCGGGCC 1723 Query 114248 TCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCG 114307 || | | || | | | || | ||||| || || || ||||| || ||||| Sbjct 1722 TCCTGGCTCTCCCAGGGGCAGCGCATGAGCATAAAGACGTCGGCAAGACCCTGAACACCA 1663 Query 114308 AGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGATAAAAA 114364 || || || || || || | ||| || || || || || ||| || || || | Sbjct 1662 AGACCGATCGGACGGTGGCGCATGTTCGAGTTGCGGGC---CTCAGGGACTGGGTAGTAG 1606 Query 114365 TTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTT 114424 || | ||||| ||| | || || || |||||| || || | || | ||||| Sbjct 1605 TTGATGTCGATCACCTTGTTGAGGTTGCGGGTGACTACTTTGACCACGTCGTAGAGCTTC 1546 Query 114425 TCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGA 114484 | || ||| || ||| || || | ||| ||||| ||||| |||| ||||| || Sbjct 1545 TTGTGATCGAA-CTG----TCCGTTGAC-GACGTACTTGGGAAGAGCGAGCGACGCGAGG 1492 Query 114485 TTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAA 114544 || ||||||| | |||||| | ||||||| || | ||||| ||||| || || Sbjct 1491 TTGCACACAGCGACCTCATCAGGAGACGTGTACTGAATGACCTCCGTGCACAAGTTCGAG 1432 Query 114545 CTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGC 114604 || |||||||| | || || || || ||||| | || |||| |||||| || || Sbjct 1431 GACTGGATGGTGCCAAGGTGCTGCTGGTTCGACTTGGCATTGCACGAATCCTTATAGAGG 1372 Query 114605 ATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCGGC- 114663 ||||| ||||| || ||||| | || |||| |||||| | ||| | || ||| Sbjct 1371 ATGTAAGGCGTGCCGGTCTCGATCTGCGACTCGAGAATGGAGAACCACAGCTCCTGGGCC 1312 Query 114664 -TGGC-ACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAAC 114721 || | ||| |||| || || || || | |||||| ||| | || ||| Sbjct 1311 TTGACGACAC-GGCGA--GCGCGGCCTTCGTTCTCGTAACGCACGTACTTCTCCTCGAAC 1255 Query 114722 TCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGA 114781 || || ||| | ||| |||| ||||| || | | ||||||||||| ||||| | Sbjct 1254 TCGTCGCCCCAGCACTCGAAGAGGCCTGGCGCTTCGTTGGGGCAGAAGAGCGACCAGTCG 1195 Query 114782 CCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCC 114841 || || |||| || ||||||||||| ||||| || | ||| || | |||||||||| Sbjct 1194 CCTCCGGCCTCGACGCGCTTCATGAACAGGTCGGGCACCCACAGGCCATAGAAGAGATCA 1135 Query 114842 CGACAGCGAGCTTCT--TCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATAT 114899 ||| || | |||| || | || || || | ||| | || || | ||| | Sbjct 1134 CGA--GCACGGTTCTCCTCCTTGCCATGGTTCTTCTTGAGCTCAAGGAAATCGAAGATGT 1077 Query 114900 CCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGA---CGACCAGCCTGGT 114956 | ||||||||||| ||||| || | ||||| | ||||| || | ||| |||| | Sbjct 1076 CGGCGTGCCACGGCTCCAGATAGATCGCGAACGCTCCCTTGCGCTTGCCACCGCCCTGAT 1017 Query 114957 TTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGC 115016 || || | || || | || | || || ||||| || |||| || | ||| | Sbjct 1016 CAACGTAGCGAGCGGTATCGTTGTAAACACGGAGCATGGGGATGAGTCCGTTGGATGTTC 957 Query 115017 CATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATAC 115076 | || || || || || || || || | || |||| | | |||||| | Sbjct 956 CGTTGGTGCCGCGGATGTAGGAGTTCGAAGCGCGGATGCGGTGGACGGCAACACCAATGC 897 Query 115077 CCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCG 115136 | ||||| |||| ||||| | ||||||| | |||| || ||||||| || ||||| | Sbjct 896 CACCTGCGGACTTGGAGATGAGAGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATGG 837 Query 115137 AGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGT 115196 |||| |||| | | || |||||||| ||| | || || | || || || |||| Sbjct 836 AGTCCTCCTTCATCGTGAGCAGGAAGCACGACGAGAGCTGCGGACGAGGCGTGCCCGCGT 777 Query 115197 TGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTCCA 115256 ||||||| || || || ||||| |||| | || || | || |||||||||| Sbjct 776 TGAAGAGAGTAGGAGTGGCGTGCGTGAAGAGCTGCTGAGAAAGGAGGTCATAGGTCTCCA 717 Query 115257 AGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGG 115316 |||||||| |||| ||| ||||| || | | ||||| ||| | ||||| || | Sbjct 716 GCACGGCGGGGATGTTGTCCTTGTGAAGGCCCACGGCGACCCTCATGAGCATGTGCTGCG 657 Query 115317 GTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGAC 115376 | |||| | || || |||| | | |||||| || | |||||||| || Sbjct 656 GCCGCTCCACGATGACTCCGTCGATCTTGAAGAGGTACGAGCGTTCGAGGGTCTTGAAAC 597 Query 115377 CAAAATA 115383 |||| || Sbjct 596 CAAAGTA 590 >seq23741 Length=113318 Score = 147 bits (162), Expect = 3e-30 Identities = 279/401 (70%), Gaps = 21/401 (5%) Strand=Plus/Minus Query 125869 GAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGAT 125928 ||| |||||||| | ||| |||| ||||||| |||| | | |||||| ||||| Sbjct 78499 GAGCAGACGATCGGCGACAAACTCGATGTACTGGCACATGAGGTTGGCGTTCATGCCGAT 78440 Query 125929 GAG-GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCA 125987 ||| | || ||||||| || || |||| |||||||||| || ||||| ||| | | Sbjct 78439 GAGCGCGACG-GGGAGCGACTCAGTGACGAACTCCTTCTCAATCTCGACGGCCTCCAGGA 78381 Query 125988 CGATGGCGTGAATGGTGTCCACCCCAGGTC----TATTGC---GCAAAGTCTTGAAGAGT 126040 ||| || ||| | | || ||||| | ||| ||| | | || ||| Sbjct 78380 TGATC---TGCTTGG-GCACGTCCGAGGTCGGCTTGTTGACGAGCATGCTGTAGAGGAGG 78325 Query 126041 TCCACGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCAC 126100 || | |||| || ||| |||||||| || ||| |||||| || ||||||||| Sbjct 78324 --CAAG-CAAAGTCGCAGTGAAGACCCTCATCGCGGCTGATGAGCTCGTTCGAGAAGGCA 78268 Query 126101 AGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAG 126160 || || |||||||| || |||||||| | |||||| || || || || || || |||||| Sbjct 78267 AGACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCAGAGAAG 78208 Query 126161 AAGATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGAC----TT 126216 ||||| ||||| ||| ||||| | | |||||||| ||||||| | |||| | Sbjct 78207 AAGATGCCCTCGACAGCGGCGAAGCCGACCAGACGCTCCGCAAAGG-TCTCGACGCCGTC 78149 Query 126217 TGTGTCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGA 126257 || ||| |||||||| ||||||| |||||| |||| || Sbjct 78148 CTTGGCAATCCACTTCAGGGCCCACTCCGCCTTCTTCTTGA 78108 >seq23882 Length=50760 Score = 107 bits (118), Expect = 2e-18 Identities = 207/303 (68%), Gaps = 2/303 (1%) Strand=Plus/Minus Query 29581 GACATCTCAACTACGAGCTTCTATGCGAGTCACGTCATCACAGCGGGTGGCGTTGGTGGC 29640 |||||| | || || || ||||| ||| |||||||||||| || | ||| || ||| Sbjct 21377 GACATCGCCACGACCAGTTTCTACGCGTCTCACGTCATCACGGCCTGCGGCTCCGGGGGC 21318 Query 29641 ATGGTCATGTTCAATGACGATGCTCATCTCAAGCGAGCTCTCATGTTTAGGGATTGGGGG 29700 |||||||||||||| || || |||||||| || ||||| | | || ||||| Sbjct 21317 ATGGTCATGTTCAACTCGGACAAGCAGCTCAAGCGTGCCACCATGTATCGTGACTGGGGA 21258 Query 29701 CGTATCGGTGACAATATTGAGGAGCCAAGTGAACGCTTCAACCACTCCGTTGATGGCATC 29760 || ||||| ||||| ||| || |||||||||| | || || || ||| Sbjct 21257 CGGATCGGCGACAACTCGGAGAAGGTGGAGGAACGCTTCACTGAGCAGGTGGACGGAATC 21198 Query 29761 CCCTACGACTGGAAGTTCCTCTATGGTGTCGCCGGG-TATCACCTCAAGGCGTGTGAGAT 29819 |||||| |||||||| ||||| || || ||| || || ||||| | ||| | Sbjct 21197 GTATACGACACCAAGTTCCTGTATGGCGT-GCTGGGCTACAACTTCAAGAGCAGCGAGGT 21139 Query 29820 GAATGCCGCATTTGGTCTCGTCCAATTGGATAAGTTGGAGGGGTTCCTTGCCACTCGACG 29879 || ||||| ||||| || ||||| | ||| | | ||| || || |||||||| || Sbjct 21138 CAACGCCGCGTTTGGACTTGTCCAGCTCGATCGCCTAGCGGGCTTTCTCGCCACTCGTCG 21079 Query 29880 TCA 29882 || Sbjct 21078 ACA 21076 Score = 86.0 bits (94), Expect = 7e-12 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 29085 CAAGAAAGTGTGGTATGCGCCCAACAAATTTGAATCATATGGGGAGGAAGAAATTAAAGC 29144 |||||| || | || || ||||| ||||| | || |||||| | || || |||| Sbjct 21915 CAAGAAGGTTTACTACGCTGCCAACGGGTTTGAGGCCTACGGGGAGCAGGAGATGCAAGC 21856 Query 29145 CGTTGAGGCTTGCCTTCGAGATGGCTGGCTCGCTGGCTTTGGTGATCGCACTATGGAGTT 29204 |||| ||| ||||| || |||||||||||||||||||| | ||| | || Sbjct 21855 CGTTCAGGAGTGCCTGCGGAGCGGCTGGCTCGCTGGCTTTGGAAGTTACACACAGCGCTT 21796 Query 29205 TGAGAAGAGGGTGGCCGACACATTCGGAAAGAGACACGGACTCTTTGTAAACTCCGG 29261 ||||| | || |||||| ||||| |||| ||||| |||||||| ||||| || Sbjct 21795 TGAGAGACGCGTCGCCGACCTGTTCGGGAAGAAGCACGGCCTCTTTGTGAACTCGGG 21739 >seq20001 Length=20085 Score = 100 bits (110), Expect = 3e-16 Identities = 182/264 (69%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 29581 GACATCTCAACTACGAGCTTCTATGCGAGTCACGTCATCACAGCGGGTGGCGTTGGTGGC 29640 |||||| | || || |||||||| ||| ||||||||||| || | ||| || ||| Sbjct 3488 GACATCGCCACGACCAGCTTCTACGCGTCCCACGTCATCACGGCCTGCGGCTCAGGCGGC 3429 Query 29641 ATGGTCATGTTCAATGACGATGCTCATCTCAAGCGAGCTCTCATGTTTAGGGATTGGGGG 29700 |||||||||||||| || || || |||||||| ||| |||||| | || ||||| Sbjct 3428 ATGGTCATGTTCAACTCGGAGGCGCAGCTCAAGCGTGCTACCATGTTCCGTGACTGGGGA 3369 Query 29701 CGTATCGGTGACAATATTGAGGAGCCAAGTGAACGCTTCAACCACTCCGTTGATGGCATC 29760 || ||||| ||||| ||| || || ||||||| | | || || || || Sbjct 3368 CGGATCGGCGACAACTCGGAGAAGGTGGAGGAGCGCTTCACCGAGCAAGTGGACGGAATT 3309 Query 29761 CCCTACGACTGGAAGTTCCTCTATGGTGTCGCCGGG-TATCACCTCAAGGCGTGTGAGAT 29819 || ||| |||||||| ||||| || || ||| || || ||||| | ||| | Sbjct 3308 GTGTATGACACCAAGTTCCTGTATGGCGT-GCTGGGCTACAACTTCAAGAGCAGCGAGGT 3250 Query 29820 GAATGCCGCATTTGGTCTCGTCCA 29843 || || || ||||| || ||||| Sbjct 3249 CAACGCAGCGTTTGGACTTGTCCA 3226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597173662161840