Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq23003 354 8e-93 seq19361 329 3e-85 >seq23003 Length=12893 Score = 354 bits (392), Expect = 8e-93 Identities = 994/1502 (66%), Gaps = 54/1502 (4%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||||| || || || ||||||||||| || || || ||| | || ||||| |||||| Sbjct 758 GCCACTCCTACTCTCTTCAACGCGGGCACGCCTCGTCCGCAGCTCTCGTCGTGCTTCCTG 817 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | |||| |||| ||||||||| || || | ||||| |||||| | || || | Sbjct 818 CTCACGATGAAGGAGGACTCCATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCTCTC 877 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || | ||| || || || || | |||||| | | || || | ||| Sbjct 878 ATCTCCAAGTCCGCAGGTGGCATTGGTGTTGCCGTCCACCGCATCCGCGCTTCGAACTCC 937 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||||||||| ||||| || || |||||||| ||| |||| |||||||| || | |||| Sbjct 938 TACATCCGCGGCACCAACGGAACATCCAACGGACTCATCCCCATGCTCCGTGTTTACAAC 997 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 | | || |||||||| || ||||| ||||| | | | ||||| | |||||| ||||| Sbjct 998 GATACCGCTCGCTACGTTGATCAGGGCGGTGGCAAGCGCAAGGGAGCGTTCGCGATCTAT 1057 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || ||||| |||||||| ||| | | |||| | || || |||||||| ||||| Sbjct 1058 CTGGAGCCGTGGCACGCCGACATCTTCGATTTCCTTGAGCTCAAGAAGAACCATGGCAAG 1117 Query 94252 GATCTGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 || ||||| | || | || |||||||| | || |||||||| ||||| || ||| Sbjct 1118 GA---GGAGAACCGTGCTCGTGATCTCTTCTATGGCCTGTGGGTGCCCGACCTGTTCATG 1174 Query 94309 AAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTG 94368 || ||||||||| || |||| || || || ||||| ||| || || || Sbjct 1175 AAGCGCGTCGAGGCCGGAGGCGACTGGTCGCTCTTCTGCCCCAACGAAGCGCCAGGCCTC 1234 Query 94369 TCCGA-CGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGA-ATCGCAGGGCA 94426 | ||| | | | | || | || || || ||| | |||||||| | || ||| | Sbjct 1235 TTCGAGTGCTGGGGCGACGAG-TTCGAGGAGAAGTACGTGCGTTACGAGAACGAAGGCCG 1293 Query 94427 AG---GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGG 94483 | ||| | || | || | ||| |||||||| || | || ||| Sbjct 1294 CGCTCGCC-GTGTCGTCAAGG--CCCAGG-AGCTGTGGTTCTCCATTCTCGAGTCGCAGA 1349 Query 94484 TGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGC 94543 | ||||| || ||||| |||||| | | ||||| || ||| |||||||| ||||||| Sbjct 1350 TCGAGACCGGCACGCCTTACATCCTCTATAAGGATTCGTGCAATGCCAAGTCGAACCAGC 1409 Query 94544 AGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTC 94603 ||||||| || ||| || |||||| ||||||| ||| | | |||| || |||| Sbjct 1410 AGCACCTTGGCACCATCCAGTCCTCGAACTTGTGCACGGAGGTCATTCAGTACACGTCTC 1469 Query 94604 CGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATG 94663 | || ||| | |||||||| ||||| | || || || ||| | ||| Sbjct 1470 CTGATGAGGTCGCTGTGTGCAACCTCGCGTCGCTCGCTCTTCCCAAGTACGT-------- 1521 Query 94664 CCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGG--GAAGGA- 94720 |||| || | |||||||| || ||| | || || || ||| | Sbjct 1522 ------CGTCAAC-GGACAGTTCGATCACAAGAAGC---TCTACGACGTGGTCAAAGTAG 1571 Query 94721 TGGTCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGA 94780 | | ||||| |||| ||| ||||||| |||| |||||| ||||| ||||| | Sbjct 1572 TCACCCGCAACCTCAACAAGGTGATCGACATCAACTACTACCCAGTCCCTGAGGCCCGCA 1631 Query 94781 ACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGG 94840 |||| ||| || || || || ||||| | || || |||||| | || |||| | Sbjct 1632 ACTCGAACATGCGCCACCGTCCGATCGGTCTTGGTGTTCAGGGTCTTGCCGACGTCTTTA 1691 Query 94841 TGATGATGCGTCTG-CCCTACGACTCTGTCGACG-CGGCGGGTTTGAATTTGAACATATT 94898 || | ||||| ||| |||| || || | | ||| | | ||| || || Sbjct 1692 TGCTCATGCG-CTGCCCCTGGGAGAGCCAGGAGGCCCGCGAG-CTCAATCGCGCTATCTT 1749 Query 94899 CGAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGG 94958 ||| | ||| || |||| || | | ||| | | ||||| ||| || | Sbjct 1750 CGAGACCATCTACTACGCCGCACTCACTGCTTCCAACGAGATGGCC---CAGGA--GCAG 1804 Query 94959 GCCAC--ACGAATCGTTCCGCGGATCGCC--CTTGGAACAGGGCATTTTTCAGTTCGACC 95014 | ||| || ||| || ||||| ||| |||||| | || ||| | Sbjct 1805 GGCACCTACCCTACGTATGCTGGCTCGCCGGCTT--CCGAGGGCAAGCTCCAACCCGATC 1862 Query 95015 TCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCA 95074 |||||||||| | ||||||| || ||||||| | || || || | | Sbjct 1863 TCTGGGGTGTTACTCCCTCGGACAGGTGGGACTGGGCTACCCTCCGTGCCAACATCGCTC 1922 Query 95075 AACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGA 95134 | |||||| | | ||| | || || ||||| |||||||| ||||| ||||| | |||| Sbjct 1923 AGCACGGTCTCAGGAACTCCCTCCTCGTGGCGCCCATGCCTACGGCATCCACCTCACAGA 1982 Query 95135 TCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGC 95194 | |||||||||||||||| ||||| || | ||||||||| | |||| | || | | Sbjct 1983 TTCTTGGCAACAACGAGTGCTTCGAGCCGTACACCTCCAATATCTACACACGTCGCATTC 2042 Query 95195 TCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTG 95254 | ||||| || ||| ||||| ||||| |||||||||| || ||||||| | | || Sbjct 2043 TTGCCGGCGACTTCACCGTCGTCAACGAGCACCTCCTCCGCGACCTGATGGAGCGAGGCT 2102 Query 95255 TGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGC-CAACGGCTCCGTCCAGAACATC 95313 ||||| | | |||||||| |||| | ||| | ||||||||| || ||||||||| Sbjct 2103 TGTGGTCGGCCGCCCTCAAGAACAAACT-CGTCGCTCACAACGGCTCAGTGCAGAACATC 2161 Query 95314 CCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373 | || || || || ||||| ||| |||||||| ||||||||||| ||||||||| Sbjct 2162 GACGAGATCCCCGATGATCTCAAGAAGCTGTACAAGACTGTGTGGGAGATTCCGCAGCGC 2221 Query 95374 GT 95375 || Sbjct 2222 GT 2223 >seq19361 Length=29087 Score = 329 bits (364), Expect = 3e-85 Identities = 995/1525 (65%), Gaps = 50/1525 (3%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||||| || || || ||||||||||| || || || ||| |||| ||||| |||||| Sbjct 14915 GCCACTCCTACTCTCTTCAACGCGGGCACGCCTCGTCCGCAGCTGTCGTCGTGCTTCCTG 14856 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | |||| |||| ||||||||| || || | ||||| |||||| | || || | Sbjct 14855 CTCACGATGAAGGAGGACTCCATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCTCTC 14796 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || | || || || || || | || ||| | | || || | || Sbjct 14795 ATCTCCAAGTCTGCCGGTGGCATTGGAGTTGCCGTTCACCGCATCCGCGCTTCGAACTCG 14736 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||||||||| ||||| || || || || || ||| |||| ||||| || |||| |||| Sbjct 14735 TACATCCGCGGCACCAACGGAACGTCGAATGGACTCATCCCCATGCTTCGTGTCTACAAC 14676 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 | | || |||||||| || ||||| ||||| | | | ||||| | |||||| ||||| Sbjct 14675 GATACCGCTCGCTACGTTGATCAGGGCGGTGGCAAGCGTAAGGGAGCGTTCGCGATCTAT 14616 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || ||||| |||||||| || | | |||| | || || |||||||| ||||| Sbjct 14615 CTGGAGCCGTGGCACGCCGATATCTTCGATTTCCTTGAGCTCAAGAAGAACCATGGCAAG 14556 Query 94252 GATCTGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 || ||||| | || | || |||||||||| || |||||||| ||||| || ||| Sbjct 14555 GA---GGAGAACCGCGCTCGTGATCTCTTCTACGGCCTGTGGGTGCCGGACCTGTTCATG 14499 Query 94309 AAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTG 94368 || ||||| ||| || ||| || || |||||||| ||| ||||| || Sbjct 14498 AAGCGCGTTGAGGCCGGAGGCGATTGGTCGCTCTTCTGTCCCAACGAAGCGCCCGGCCTC 14439 Query 94369 TCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAG 94428 | ||| || || | || ||||| ||| | || ||||| |||| Sbjct 14438 TTCGAGTGCTGGGGTGAGGAGTTCGAAGAGAAGTACGTGCGCTACGAGAATGAGGGACGC 14379 Query 94429 GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488 || | || | | || | |||||||| || | || |||| | ||| Sbjct 14378 GCTCGCCGCGTCGTCAAGGCCCAGGAGCTGTGGTTCTCCATTCTCGAATCACAGATCGAG 14319 Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548 || || ||||| |||||| | | ||||||||| ||| |||||||| |||||||||||| Sbjct 14318 ACCGGCACGCCTTACATCCTTTACAAGGACTCGTGCAATGCCAAGTCGAACCAGCAGCAC 14259 Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608 ||||| ||| || |||||| ||||||| ||| | | ||| || ||||| || Sbjct 14258 CTCGGCACCATCCAGTCCTCGAACTTGTGCACGGAGGTCATTCAGTTCACGTCTCCTGAT 14199 Query 94609 GAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTAC 94668 ||| | || ||||| ||||| | || || || | | | ||| Sbjct 14198 GAGGTCGCAGTGTGCAACCTCGCGTCGCTCGCTCTTCCGAAGTACGT------------- 14152 Query 94669 ACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTG 94728 |||| || || |||||||| || ||||| | | || || | | | ||| | Sbjct 14151 -CGTCAACGGC-CAGTTCGATCACAAGAAGCTTTT---CGACGTGGTCAAGGTCGTCACG 14097 Query 94729 ---AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCA 94785 ||||| |||| ||| ||||||| |||| ||| || ||| ||||| ||||| Sbjct 14096 CGCAACCTCAACAAGGTGATCGACATCAACTACTATCCAGTCATTGAGGCCCGCAACTCG 14037 Query 94786 AACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATG 94845 ||| || || || || ||||| | || || |||||| | || |||| | || | Sbjct 14036 AACATGCGTCACCGCCCGATCGGTCTTGGTGTTCAGGGTCTTGCCGACGTCTTCATGCTC 13977 Query 94846 ATGCGTCTGCCC-TACGACTCTGTCGACG-CGGCGGGTTTGAATTTGAACATATTCGAAA 94903 ||||| |||||| | || || | | ||| | | ||| || ||||| | Sbjct 13976 ATGCG-CTGCCCATGGGAGAGCCAGGAGGCCCGCGAG-CTCAATCGCGCTATCTTCGAGA 13919 Query 94904 GCATTTATTACGGGGCCATGAAACAATCCGTCCACT----TGGCCAGATCGGACGGCGGG 94959 ||| || |||| || | || | | || | | |||||| ||| || || Sbjct 13918 CCATCTACTACGCTGC----ACTCACTGCTTCTAATGAGATGGCCA---AGGA--GCAGG 13868 Query 94960 CCAC--ACGAATCGTTCCGCGGATCGCC--CTTGGAACAGGGCATTTTTCAGTTCGACCT 95015 || || | | | || ||||| ||| |||||| | ||| |||||| Sbjct 13867 GTACTTACCCTACATACGCGGGCTCGCCAGCTT--CCGAGGGCAAGCTCCAGCCCGACCT 13810 Query 95016 CTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAA 95075 |||||| | | ||||||| || ||||||| | || || || | | | Sbjct 13809 CTGGGGCATTACCCCCTCGGACAGGTGGGACTGGGCTACCCTCCGTGCCAACATCGCTCA 13750 Query 95076 ACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGAT 95135 ||||| | | ||| | || || ||||| |||||||| || || ||||| | ||||| Sbjct 13749 GCACGGCCTCAGGAACTCCCTCCTCGTGGCACCCATGCCTACAGCATCCACCTCTCAGAT 13690 Query 95136 CCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCT 95195 || ||||||||||||| ||||| || | |||||||||| | |||| | || | || Sbjct 13689 TCTCGGCAACAACGAGTGCTTCGAGCCGTACACCTCCAACATCTACACACGTCGCATTCT 13630 Query 95196 CGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGT 95255 || || || ||| ||||| ||||| |||||||||| || ||||||| | | || | Sbjct 13629 TGCGGGCGACTTCACCGTCGTCAACGAGCACCTCCTCCGCGACCTGATGGAGCGAGGCTT 13570 Query 95256 GTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCC 95315 |||| | | | |||||| |||| | | |||||||||||| ||||||||| Sbjct 13569 GTGGTCGGCCGCCCTTAAGAACAAACTCGTGGCCCACAACGGCTCCGTGCAGAACATCGA 13510 Query 95316 GCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGT 95375 | || || || ||| ||||| ||| |||||||| ||||||||||| ||||||||||| Sbjct 13509 CGAGATCCCTGATGACCTCAAGAAGCTGTACAAGACTGTGTGGGAGATTCCGCAGCGCGT 13450 Query 95376 GATACTCGACCACGCGGCCGCCCGC 95400 | ||||| || |||| |||| Sbjct 13449 CGTCATCGACATGGCCGCCGACCGC 13425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494574177004080