Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq19361 107 2e-18 seq23003 96.9 3e-15 seq22955 91.5 1e-13 seq22211 89.7 5e-13 seq23826 82.4 7e-11 >seq19361 Length=29087 Score = 107 bits (118), Expect = 2e-18 Identities = 482/751 (64%), Gaps = 37/751 (5%) Strand=Plus/Minus Query 122916 CAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACG--CGACATCGAAAACGCGA 122973 || || ||||||||| | ||||| | ||| | ||| ||| | ||||| || | Sbjct 15014 CAGCACATGCTCATGAGGGTCGCCGTCGGCCTTCAC--ACGGACAACATCCCCGCCGTGC 14957 Query 122974 CCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCG 123033 || || |||||| | | || || | | ||||||||||| | ||| ||| | ||| Sbjct 14956 TGGAGACATACGATCTCCTCTCGCAGCAGCTCTTCACGCACGCCACTCCTACTCTCTTCA 14897 Query 123034 CCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTTGCGCGAAGACA 123093 ||| |||||| || ||| |||| ||||| || ||||||| || || ||| Sbjct 14896 ACGCGGGCACGCCTCGTCCGCAGCTGTCGTCGTGCTTCCTGCTCACGATGAAGGAGGACT 14837 Query 123094 GCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTTCCAAATTTGGCGGCG 123153 |||| || ||||| || || | | ||||| | || ||||| | || ||| | Sbjct 14836 CCATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCTCTCATCTCCAAGTCTGCCGGTG 14777 Query 123154 GCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCG----GAAGCCG--CATCAGAAGCA 123207 |||| || || ||| ||| | | ||||| ||| || |||| | ||| Sbjct 14776 GCATTGGAGTTGCCGTTCACCGCAT------CCGCGCTTCGAACTCGTACATCCGCGGCA 14723 Query 123208 CCGACGGAA--TCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCG 123265 || |||||| ||| | || ||| ||||||| || || ||||| | ||| || Sbjct 14722 CCAACGGAACGTCGAAT--GGACTCATCCCCATGCTTCGTGTCTACAACGATACCGCTCG 14665 Query 123266 GCACGTCGACCAGGGCGG---CAAACGCAAAGGCGCGATGGCGATCTATCTAGAACCGTG 123322 |||| || |||||||| ||| || || || ||| | ||||||||||| || ||||| Sbjct 14664 CTACGTTGATCAGGGCGGTGGCAAGCGTAAGGGAGCGTTCGCGATCTATCTGGAGCCGTG 14605 Query 123323 GCACGTTGATGTGTACGATTT-TTTAAATTTAAAACGCAACATGGGGGCGGAAGAAAAGA 123381 ||||| ||| | | |||||| || | | || | | | ||| || ||| || || Sbjct 14604 GCACGCCGATATCTTCGATTTCCTTGAGCTCAAGAAGAACCAT-GGCAAGGAGGAGAACC 14546 Query 123382 AAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGCGTAAAAG 123441 || || ||| | || |||| | ||||| || || |||| ||| ||||| | | Sbjct 14545 GCGCTCGTGATCTCTTCTACGGCCTGTGGGTGCCGGACCTGTTCATGAAGCGCGTTGAGG 14486 Query 123442 ACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTG-TCCCGGCTTGAGCGACGTTTAC 123500 || |||| ||||||||| | |||||| | || | |||||| | ||| | Sbjct 14485 CCGGAGGCGATTGGTCGCTCTTCTGTCCC-AACGAAGCGCCCGGCCTCTTCGAGTGCTGG 14427 Query 123501 GGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAG-----GCAAACAGGTTA 123555 || | |||| || ||| ||||| || |||||| || | || | | | Sbjct 14426 GGTGAGGAGTTCGAAGAGAAGTACGTGCGCTACGAGAATGAGGGACGCGCTCGCCGCGTC 14367 Query 123556 GTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAAACCGGAA 123615 |||| | || | | || | |||| | ||| ||||| |||| |||| ||||| | Sbjct 14366 GTCAAGGCCCAGGAGCTG--TGGTTC---TCCATTCTCGAATCACAGATCGAGACCGGCA 14312 Query 123616 CGCCGTACATGCTCTACAAAGACGCCTGCAA 123646 |||| ||||| || ||||| ||| | ||||| Sbjct 14311 CGCCTTACATCCTTTACAAGGACTCGTGCAA 14281 >seq23003 Length=12893 Score = 96.9 bits (106), Expect = 3e-15 Identities = 307/470 (65%), Gaps = 7/470 (1%) Strand=Plus/Plus Query 123006 TTCACGCACGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCG 123065 ||||||||||| | ||| ||| | ||| ||| |||||| || ||| | || ||| Sbjct 749 TTCACGCACGCCACTCCTACTCTCTTCAACGCGGGCACGCCTCGTCCGCAGCTCTCGTCG 808 Query 123066 TGTTTTTTGCTCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGAT 123125 || || ||||||| || || ||| |||| || ||||| || || | | Sbjct 809 TGCTTCCTGCTCACGATGAAGGAGGACTCCATCGAGGGCATCTACGACACGCTCAAGCAG 868 Query 123126 TGCGCGTTGATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGC 123185 ||||| | || ||||| | | || ||||| || || ||| ||| | | | | | Sbjct 869 TGCGCTCTCATCTCCAAGTCCGCAGGTGGCATTGGTGTTGCCGTCCACCGCATCCGCG-C 927 Query 123186 CGCGGAAGCCG-CATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCG 123244 || | || |||| | ||||| |||||| || ||| ||| ||||||| || Sbjct 928 TTCGAACTCCTACATCCGCGGCACCAACGGAACATCCAACGGACTCATCCCCATGCTCCG 987 Query 123245 AGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGG---CAAACGCAAAGGCGCGAT 123301 |||||||| | ||| || |||| || |||||||| ||| ||||| || ||| | Sbjct 988 TGTTTACAACGATACCGCTCGCTACGTTGATCAGGGCGGTGGCAAGCGCAAGGGAGCGTT 1047 Query 123302 GGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTT-TTTAAATTTAAAACGCA 123360 ||||||||||| || |||||||||| || | | |||||| || | | || | | | Sbjct 1048 CGCGATCTATCTGGAGCCGTGGCACGCCGACATCTTCGATTTCCTTGAGCTCAAGAAGAA 1107 Query 123361 ACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATT 123420 ||| || ||| || || || || ||| | || || | | ||||| ||||| Sbjct 1108 CCAT-GGCAAGGAGGAGAACCGTGCTCGTGATCTCTTCTATGGCCTGTGGGTGCCCGACC 1166 Query 123421 TGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCC 123470 |||| ||| ||||| | | || |||| ||||||||| | || ||| Sbjct 1167 TGTTCATGAAGCGCGTCGAGGCCGGAGGCGACTGGTCGCTCTTCTGCCCC 1216 >seq22955 Length=9686 Score = 91.5 bits (100), Expect = 1e-13 Identities = 165/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | | ||| || || || ||||| ||||||||||| || || ||| Sbjct 8151 ATACCTCCACGCAGGCGGAGCACGAGGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCG 8210 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | || || | || || || ||| | || | || |||||||| || Sbjct 8211 GCAAGCGTACGACCGTCCTCAAGCTGCTTACCGGCGAAGATAAGGCGCTGCTGGTCGGGG 8270 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || || || || || || || || | || | || | ||| ||| ||||| Sbjct 8271 GGAATACCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATGGTATCGCTCGACTC 8329 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 |||||||||||||| || || ||||| | ||| || || || || ||||| ||| || Sbjct 8330 GACTTCGAGAGTAATGGTCTTACCGGTCAAAGTCTTGACGAAGATCTGCATACCGCCAC 8388 >seq22211 Length=15201 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | | ||| || || || ||||| |||||||| || || || ||| Sbjct 4432 ATACCTCCACGCAGGCGGAGCACGAGGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCG 4373 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | || || | || || || ||| | || | || |||||||| || Sbjct 4372 GCCAGCGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGA 4313 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || || || ||||| || || || | || | || | ||| ||| ||||| Sbjct 4312 GGAATACCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTCTCGATGGTATCGCTCGACTC 4254 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||||||||| || || ||||| | ||| || || || || ||||| Sbjct 4253 GACTTCGAGAGTAATGGTCTTACCGGTCAAAGTCTTGACGAAGATCTGCAT 4203 >seq23826 Length=10614 Score = 82.4 bits (90), Expect = 7e-11 Identities = 163/239 (68%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | | ||| || || || || || ||||| ||||| || || ||| Sbjct 8750 ATACCTCCACGAAGGCGAAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCG 8691 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | || || || ||| | || | || |||||||| || Sbjct 8690 GCAAGGGTACGGCCGTCCTCAAGCTGCTTACCCGCGAAGATGAGGCGCTGCTGGTCGGGG 8631 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || || || || || || || || | || | || | ||| ||| ||||| Sbjct 8630 GGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATGGTATCGCTCGACTC 8572 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 |||||||||||||| || || || || | ||| || || || || ||||| ||| || Sbjct 8571 GACTTCGAGAGTAATGGTCTTACCAGTCAAAGTCTTGACGAAGATCTGCATACCGCCAC 8513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451867045336080