Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq19361 251 9e-62 seq23003 244 1e-59 seq23741 143 3e-29 seq20001 107 2e-18 seq23882 105 8e-18 >seq19361 Length=29087 Score = 251 bits (278), Expect = 9e-62 Identities = 1111/1736 (64%), Gaps = 47/1736 (3%) Strand=Plus/Plus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 || ||||||||||| || |||||||| |||| ||| || || | ||||| || | Sbjct 13300 CGAAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAAGCGTAGAAGTGCATCGAAGTG 13359 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | ||||| || | || | ||||| ||| ||| | ||| || |||||| | Sbjct 13360 AGCTTGGCGAAGGAAGGCTCTCCCATGTAGATGTTGAGCGACTGGCTCTGGTCGATGTAT 13419 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTG 115737 || || || ||||| || || || | | | || ||||||||||| || Sbjct 13420 GCAGAGCGGTCGGCGGCCATGTCGATGACGACGCGCTGCGGAATCTCCCACACAGTCTTG 13479 Query 115738 TAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTG 115797 || || ||||| | ||||| ||||| || |||| || || | ||||| || | | Sbjct 13480 TACAGCTTCTTGAGGTCATCAGGGATCTCGTCGATGTTCTGCACGGAGCCGT-TG--TGG 13536 Query 115798 ACCATGAGATCCTTCATAT---CCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACG 115854 ||| ||| | ||| || | ||||| | || || | | || || | | Sbjct 13537 GCCACGAGTTTGTTCTTAAGGGCGGCCGACCACAAGCCTCGCTCCATCAGGTCGCGGAGG 13596 Query 115855 AGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTC 115914 ||||||| ||||| || || || ||||| || |||| | |||||||||| Sbjct 13597 AGGTGCTCGTTGACGACGGTGAAGTCGCCCGCAAGAATGCGACGTGTGTAGATGTTGGAG 13656 Query 115915 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 115974 ||||| ||||| |||||||| ||||| || | || || | ||||| ||||| |||||| Sbjct 13657 GTGTACGGCTCGAAGCACTCGTTGTTGCCGAGAATCTGAGAGGTGGATGCTGTAGGCATG 13716 Query 115975 GGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCC 116034 ||||||| ||| ||| ||| | ||| || | ||| | ||||| || Sbjct 13717 GGTGCCACGAGGAGGGAGTTCCTGAGGCCGTGCTGAGCGATGTTGGCACGGAGGGTAGCC 13776 Query 116035 CAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGAC 116094 ||||| | || | | |||| | || |||||| | || | ||| Sbjct 13777 CAGTCCCACCTGTCCGAGGGGGTAATGCCCCAGAGGTCGGGCTGGAGCTTGCCCTCGGAA 13836 Query 116095 GCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCA----ATTCGGAGCT 116150 |||||||| ||| | |||| || | |||| ||| |||| ||| | ||| Sbjct 13837 GCTGGCGAGCCCGCGTATGTAGGGTAAGTACCCTGCTCCTTGGCCATCTCATTAGAAGCA 13896 Query 116151 CGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAAT-GCGAGCATTCATTGCCTTGGCCT 116209 ||| || |||| || || ||||| || || ||| | ||| | | ||||| Sbjct 13897 GT----GAGTGCAGCGTAGTAGATGGTCTCGAAGATAGCGCG-ATTGAGCTCGCGGGCCT 13951 Query 116210 CGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGA 116269 | | | || | | | || | || || || || || ||||| || ||||| | Sbjct 13952 CCTGGCTCTCCCATGGGCAGCGCATGAGCATGAAGACGTCGGCAAGACCCTGAACACCAA 14011 Query 116270 GGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACG---GGATAAAAAT 116326 | || || ||||| || | ||| || || || || || ||| | | ||||| | | Sbjct 14012 GACCGATCGGGCGGTGACGCATGTTCGAGTTGCGGGC---CTCAATGACTGGATAGTAGT 14068 Query 116327 TCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTT 116386 | | ||||| ||| | || || || ||||| ||||| | || |||||| | Sbjct 14069 TGATGTCGATCACCTTGTTGAGGTTGCGCGTGACGACCTTGACCACGTCGAAAAGCTTCT 14128 Query 116387 CGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGAT 116446 || ||| || ||| || | | ||| ||||| ||||| |||| ||||| || | Sbjct 14129 TGTGATCGAA-CTGGCCGT----TGAC-GACGTACTTCGGAAGAGCGAGCGACGCGAGGT 14182 Query 116447 TACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAAC 116506 | ||||| | | |||||| | ||| ||| || | ||||| ||||| || || Sbjct 14183 TGCACACTGCGACCTCATCAGGAGACGTGAACTGAATGACCTCCGTGCACAAGTTCGAGG 14242 Query 116507 TCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCA 116566 || |||||||| | || || || || ||||| | || |||| |||||||| || | Sbjct 14243 ACTGGATGGTGCCGAGGTGCTGCTGGTTCGACTTGGCATTGCACGAGTCCTTGTAAAGGA 14302 Query 116567 TATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGC-- 116624 | || ||||| || ||||| | || || | |||||| | ||| | || ||| Sbjct 14303 TGTAAGGCGTGCCGGTCTCGATCTGTGATTCGAGAATGGAGAACCACAGCTCCTGGGCCT 14362 Query 116625 TGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTC 116684 || | | |||| || || ||||| | |||||| ||| | || ||||| Sbjct 14363 TGACGACGCGGCGA--GCGCGTCCCTCATTCTCGTAGCGCACGTACTTCTCTTCGAACTC 14420 Query 116685 TTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGAC 116743 |||||| |||| ||| |||| || || || | | ||||||||||| ||||| | | Sbjct 14421 CTCACCC-CAGCACTCGAAGAGGCCGGGCGCTTCGTTGGGACAGAAGAGCGACCAATCGC 14479 Query 116744 CACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG-AGAAGAGATCC 116802 | || ||||||| ||||||||||| ||||| || | ||| || |||| |||||||||| Sbjct 14480 CTCCGGCCTCAACGCGCTTCATGAACAGGTCCGGCACCCACAG-GCCGTAGAAGAGATCA 14538 Query 116803 CGACAGCGAGCTTCT--TCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATAT 116860 || |||| | |||| || | || || || | ||| | || || | ||||| Sbjct 14539 CG--AGCGCGGTTCTCCTCCTTGCCATGGTTCTTCTTGAGCTCAAGGAAATCGAAGATAT 14596 Query 116861 CCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGCCTGGT 116917 | ||||||||||| ||||| || | ||||| | ||||| || | ||| |||| | Sbjct 14597 CGGCGTGCCACGGCTCCAGATAGATCGCGAACGCTCCCTTACGCTTGCCACCGCCCTGAT 14656 Query 116918 TTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGC 116977 || || | || || |||| | || |||||||| || |||| |||| || | Sbjct 14657 CAACGTAGCGAGCGGTATCGTTGTAGACACGAAGCATGGGGATGAGTCCATTCGACGTTC 14716 Query 116978 CATTTGTCCCCCGAA--TACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAAT 117035 | || || || || | |||||| || || | || ||| | | | ||||| Sbjct 14717 CGTTGGTGCCGCGGATGTACGAG--TTCGAAGCGCGGATGCGGTGAACGGCAACTCCAAT 14774 Query 117036 ACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGAT 117095 || || || |||| ||||| | ||||||| | |||| || ||||||| || ||||| Sbjct 14775 GCCACCGGCAGACTTGGAGATGAGAGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGAT 14834 Query 117096 CGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGC 117155 ||||| |||| | | || |||||||| ||||| || || | || || || || Sbjct 14835 GGAGTCCTCCTTCATCGTGAGCAGGAAGCACGACGACAGCTGCGGACGAGGCGTGCCCGC 14894 Query 117156 GTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTC 117215 ||||||||| || || || ||||| |||| | || || | |||||| ||||| Sbjct 14895 GTTGAAGAGAGTAGGAGTGGCGTGCGTGAAGAGCTGCTGCGAGAGGAGATCGTATGTCTC 14954 Query 117216 CAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGT 117271 || || | ||| |||| ||| ||||| |||| | ||||| ||| | ||||| Sbjct 14955 CAGCACGGCGGGGATGTTGTCCGTGTGAAGGCCGACGGCGACCCTCATGAGCATGT 15010 >seq23003 Length=12893 Score = 244 bits (270), Expect = 1e-59 Identities = 1149/1804 (64%), Gaps = 37/1804 (2%) Strand=Plus/Minus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 |||||||||||||| || |||||||| |||| ||| || || | ||||| || | Sbjct 2373 CGGAGGTAGTACATGCCAGTCTTGAGGCCCTTGCGCCAAGCGTAGAAGTGCATCGAAGTG 2314 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | ||||| || | || ||||| ||| ||| | ||| ||||||||| | Sbjct 2313 AGCTTGGCGAAGGAAGGCTCGCCCATGTAGATGTTGAGGGACTGGCTCTGATCGATGTAC 2254 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTG 115737 ||||| || ||||| || || || | | | || ||||||||||| || Sbjct 2253 GCAGAGCGATCGGCAGCCATGTCGATGACTACGCGCTGCGGAATCTCCCACACAGTCTTG 2194 Query 115738 TAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTG 115797 || || ||||| | |||||| ||||| || |||| || || | ||||| || || Sbjct 2193 TACAGCTTCTTGAGATCATCGGGGATCTCGTCGATGTTCTGCACTGAGCCGT-TG---TG 2138 Query 115798 ACC-ATGAGATCCTTCATAT---CCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCAC 115853 | | | ||| | ||| | | ||||| | || || | | || || | Sbjct 2137 AGCGACGAGTTTGTTCTTGAGGGCGGCCGACCACAAGCCTCGCTCCATCAGGTCGCGGAG 2078 Query 115854 GAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGT 115913 |||||||| ||||| || || || || || || |||| | ||||| |||| Sbjct 2077 GAGGTGCTCGTTGACGACGGTGAAGTCGCCGGCAAGAATGCGACGTGTGTAGATATTGGA 2018 Query 115914 CGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCAT 115973 ||||| ||||| |||||||| ||||| || | || || | ||||| || || ||||| Sbjct 2017 GGTGTACGGCTCGAAGCACTCGTTGTTGCCAAGAATCTGTGAGGTGGATGCCGTAGGCAT 1958 Query 115974 GGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTC 116033 ||| |||| ||| ||| ||| | |||||| | ||| | ||||| | Sbjct 1957 GGGCGCCACGAGGAGGGAGTTCCTGAGACCGTGCTGAGCGATGTTGGCACGGAGGGTAGC 1898 Query 116034 CCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGA 116093 |||||| | || | | | |||| | ||| ||||| | || | ||| Sbjct 1897 CCAGTCCCACCTGTCCGAGGGAGTAACACCCCAGAGATCGGGTTGGAGCTTGCCCTCGGA 1838 Query 116094 CGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGC 116153 || ||||| || || | || || | ||||| ||| |||| ||| | || Sbjct 1837 AGCCGGCGAGCCAGCATACGTAGGGTAGGTGCCCTGCTCCTGGGCCATCTCGTTGGAAGC 1778 Query 116154 CTCGAGGGCTGCGTGATACATTGTCTCAAAAAT-GCGAGCATTCATTGCCTTGGCCTCGT 116212 ||| || |||| || || ||||| || || ||| | ||| | | |||||| | Sbjct 1777 AGTGAGTGCGGCGTAGTAGATGGTCTCGAAGATAGCGCG-ATTGAGCTCGCGGGCCTCCT 1719 Query 116213 CGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGC 116272 | || | | | || | ||||| || || || ||||| || ||||| || | Sbjct 1718 GGCTCTCCCAGGGGCAGCGCATGAGCATAAAGACGTCGGCAAGACCCTGAACACCAAGAC 1659 Query 116273 CAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGATAAAAATTCC 116329 | || || || || | ||| || || || || || ||| || || || | || Sbjct 1658 CGATCGGACGGTGGCGCATGTTCGAGTTGCGGGC---CTCAGGGACTGGGTAGTAGTTGA 1602 Query 116330 TATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGT 116389 | ||||| ||| | || || || |||||| || || | || | ||||| | || Sbjct 1601 TGTCGATCACCTTGTTGAGGTTGCGGGTGACTACTTTGACCACGTCGTAGAGCTTCTTGT 1542 Query 116390 AATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTAC 116449 ||| || ||| || || | ||| ||||| ||||| |||| ||||| || || | Sbjct 1541 GATCGAA-CTG----TCCGTTGAC-GACGTACTTGGGAAGAGCGAGCGACGCGAGGTTGC 1488 Query 116450 ACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCT 116509 |||||| | |||||| | ||||||| || | ||||| ||||| || || || Sbjct 1487 ACACAGCGACCTCATCAGGAGACGTGTACTGAATGACCTCCGTGCACAAGTTCGAGGACT 1428 Query 116510 TAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATAT 116569 |||||||| | || || || || ||||| | || |||| |||||| ||||| || | Sbjct 1427 GGATGGTGCCAAGGTGCTGCTGGTTCGACTTGGCATTGCACGAATCCTTATAGAGGATGT 1368 Query 116570 ATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGC--TGG 116627 | ||||| || ||||| | || |||| |||||| | ||| | || ||| || Sbjct 1367 AAGGCGTGCCGGTCTCGATCTGCGACTCGAGAATGGAGAACCACAGCTCCTGGGCCTTGA 1308 Query 116628 C-ACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTT 116686 | ||| |||| || || || || | |||||| ||| |||| ||||| | Sbjct 1307 CGACAC-GGCGA--GCGCGGCCTTCGTTCTCGTAACGCACGTACTTCTCCTCGAACTCGT 1251 Query 116687 CACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCA 116745 | ||| |||| ||| |||| ||||| || | | || |||||||| ||||| | || Sbjct 1250 CGCCC-CAGCACTCGAAGAGGCCTGGCGCTTCGTTGGGGCAGAAGAGCGACCAGTCGCCT 1192 Query 116746 CCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGA 116805 || |||| || ||||||||||| ||||| || | ||| || | |||||||||| ||| Sbjct 1191 CCGGCCTCGACGCGCTTCATGAACAGGTCGGGCACCCACAGGCCATAGAAGAGATCACGA 1132 Query 116806 CAGCGAGCTTCT--TCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCG 116863 || | |||| || | || || || | ||| | || || | ||| || | Sbjct 1131 --GCACGGTTCTCCTCCTTGCCATGGTTCTTCTTGAGCTCAAGGAAATCGAAGATGTCGG 1074 Query 116864 CGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGA---CGACCAGCCTGGTTTA 116920 |||||||||| ||||| || | ||||| | |||||||| | ||| |||| | | Sbjct 1073 CGTGCCACGGCTCCAGATAGATCGCGAACGCTCCCTTGCGCTTGCCACCGCCCTGATCAA 1014 Query 116921 CATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCAT 116980 | || | || || |||| | || || ||||| || |||| || | ||| || | Sbjct 1013 CGTAGCGAGCGGTATCGTTGTAAACACGGAGCATGGGGATGAGTCCGTTGGATGTTCCGT 954 Query 116981 TTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCC 117040 | || || || || || || || | || ||||| | | |||||| || | Sbjct 953 TGGTGCCGCGGATGTAGGAGTTCGAAGCGCGGATGCGGTGGACGGCAACACCAATGCCAC 894 Query 117041 CTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGT 117100 |||| |||| ||||| | ||||||| | |||| || ||||||| || ||||| |||| Sbjct 893 CTGCGGACTTGGAGATGAGAGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATGGAGT 834 Query 117101 CACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGA 117160 | |||| | | || |||||||| ||| | || || | || || || ||||||| Sbjct 833 CCTCCTTCATCGTGAGCAGGAAGCACGACGAGAGCTGCGGACGAGGCGTGCCCGCGTTGA 774 Query 117161 AGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGA 117220 |||| || || || ||||| |||| | || || | || |||||||||| | Sbjct 773 AGAGAGTAGGAGTGGCGTGCGTGAAGAGCTGCTGAGAAAGGAGGTCATAGGTCTCCAGCA 714 Query 117221 CAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTG 117280 | | ||| |||| ||| ||||| || | | ||||| ||| | ||||| || || Sbjct 713 CGGCGGGGATGTTGTCCTTGTGAAGGCCCACGGCGACCCTCATGAGCATGTGCTGCGGCC 654 Query 117281 TTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAA 117340 |||| | || || |||| | | |||||| || | |||||||| ||||| Sbjct 653 GCTCCACGATGACTCCGTCGATCTTGAAGAGGTACGAGCGTTCGAGGGTCTTGAAACCAA 594 Query 117341 AATA 117344 | || Sbjct 593 AGTA 590 >seq23741 Length=113318 Score = 143 bits (158), Expect = 3e-29 Identities = 275/400 (69%), Gaps = 19/400 (5%) Strand=Plus/Minus Query 127342 GAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGAT 127401 ||| |||||||| | ||| |||| ||||||| |||| | | |||||| ||||| Sbjct 78499 GAGCAGACGATCGGCGACAAACTCGATGTACTGGCACATGAGGTTGGCGTTCATGCCGAT 78440 Query 127402 GAG-GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTA 127460 ||| | || ||||||| || || |||| |||||||||| || || || ||| | | Sbjct 78439 GAGCGCGACG-GGGAGCGACTCAGTGACGAACTCCTTCTCAATCTCGACGGCCTCCAGGA 78381 Query 127461 CGATGGCGTGAATAGTGTCCACCCCAGGTC----TATTGCGTAAAGTCTTGAAGAGTTCC 127516 ||| || | | | | || ||||| | ||| | | || |||| Sbjct 78380 TGATC---TGCTTGG-GCACGTCCGAGGTCGGCTTGTTGACGAGCATGCTGTAGAGGAGG 78325 Query 127517 ACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGA 127576 |||||| || ||| |||||||| || ||| |||||| || ||||||||| ||| Sbjct 78324 CAAGCAAAGTCGCAGTGAAGACCCTCATCGCGGCTGATGAGCTCGTTCGAGAAGGCAAGA 78265 Query 127577 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAG 127636 || |||||||| || |||||||| | |||||| || || || || ||||||||||||||| Sbjct 78264 CCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCAGAGAAGAAG 78205 Query 127637 ATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGG------AGCGGGACTTT 127690 || ||||| ||| ||||| | | |||||||| ||||||| || | ||| Sbjct 78204 ATGCCCTCGACAGCGGCGAAGCCGACCAGACGCTCCGCAAAGGTCTCGACGCCGTCCTTG 78145 Query 127691 GTATCAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGA 127730 | ||| |||||||| ||||||| ||||| |||| || Sbjct 78144 G---CAATCCACTTCAGGGCCCACTCCGCCTTCTTCTTGA 78108 >seq20001 Length=20085 Score = 107 bits (118), Expect = 2e-18 Identities = 515/807 (64%), Gaps = 54/807 (7%) Strand=Plus/Minus Query 31015 CAAGAAAGTGTGGTATGCGCCCAACAAATTTGAATCATATGGGGAGGAAGAAATTAAAGC 31074 |||||| || | || || ||||| |||||| | || || ||| |||| || |||| Sbjct 4026 CAAGAAGGTCTACTACGCCGCCAACGGCTTTGAAGCTTACGGTGAGCAAGAGATCCAAGC 3967 Query 31075 CGTTGAGGATTGCCTTCGCGATGGCTGGCTCGCTGGCTTTGGTGATCGCACTATGGAGTT 31134 |||| |||||||| | ||| || ||||||||||||||||| ||| | || Sbjct 3966 CGTTCAGGATTGCTTGCGCAGCGGATGGCTCGCTGGCTTTGGAAGCTACACGCAGCGTTT 3907 Query 31135 TGAGAAGAGGGTGGCCGACACATTCGGAAAGAGACACGGACTCTTTGTAAACTCCGGGAG 31194 ||||| | || |||||| ||| |||||| ||||| |||||||| ||||| || Sbjct 3906 TGAGAGCCGCGTCGCCGACCTGTTCAGAAAGAAGCACGGCCTCTTTGTGAACTCGGGCTC 3847 Query 31195 TAGTGCGATCCTTTTAGGGCTCTGT--GCCCTCAACCTCCCAAAAGGCTCTGAGGTTGTG 31252 || | ||| | ||| ||| || ||| |||| || ||||| || || Sbjct 3846 CTCGGCCAACCTGCT--GGCCCTGGCGGCGCTCGACCTGCCGGCTGGCTCGCGCGTGTTG 3789 Query 31253 ACACCTGCGTGCGGATTTTCCACGACCGTGGCACCTCTCGTACAACTTGGCCTCAAACCG 31312 || || || || || | ||||||||||| || || | || || || ||| | || Sbjct 3788 ACGCCGGCCTGTACGTTCGCAACGACCGTGGCCCCCATCCTGCAGCTCGGACTCGAGCCT 3729 Query 31313 GTGTTCTGT-GATGT-GAGTCTCAACTCCTATGTTCCAAGTGTTGAGCAGCTGAAGAAGG 31370 ||||| ||| || || ||| || | || || || || |||| | | || | Sbjct 3728 GTGTT-TGTCGACGTTGAG-CTTGCGACGTACGTCCCGTCGGTGGAGCGCGTCATGAGCG 3671 Query 31371 TAGTGACCCCCAAA----ACAA-------AATGT-ATCCTGCTTCCCAATCTCATTGGGA 31418 | ||| || || | |||| || || ||| |||| ||||| || |||| | Sbjct 3670 TGGTGGCCGCCGACGCCGACAAGGCCATCAAGGTCATCATGCTGCCCAACCTGGTTGGCA 3611 Query 31419 ATGTCCCCGATTGGGAGGCCATTCGCGAAGCCTTCCCCGGGG-TGACC------------ 31465 | || || |||||| || | | | | |||| || | | | || || Sbjct 3610 ACGTGCCTGATTGGCCGGGCCTGAGGGCAGCCCTCACGGCAGCTGGCCGCAGCGAGATTG 3551 Query 31466 --CTCTTTGAAGATTCCGCGGATACCATC----------ACGAAG--ACTGGGTGTACG- 31510 ||| | || || || || || |||||| |||| | || || || | Sbjct 3550 TGCTCATCGAGGACTCAGCCGACACCATCCCGCACTACGACGACGCCACCGGCTGCTCCT 3491 Query 31511 --GACATCTCAACTACGAGCTTCTATGCGAGCCACGTCATCACAGCGGGTGGCGTTGGTG 31568 |||||| | || || |||||||| ||| |||||||||||| || | ||| || | Sbjct 3490 CCGACATCGCCACGACCAGCTTCTACGCGTCCCACGTCATCACGGCCTGCGGCTCAGGCG 3431 Query 31569 GTATGGTCATGTTCAATGACGATGAGCACCTTAAGCGAGCTCTCATGTTTAGGGATTGGG 31628 | |||||||||||||| || | ||| || ||||| ||| |||||| | || |||| Sbjct 3430 GCATGGTCATGTTCAACTCGGAGGCGCAGCTCAAGCGTGCTACCATGTTCCGTGACTGGG 3371 Query 31629 GGCGTATCGGTGACAATATTGAGGAGCCAAGTGAACGCTTCAACCACTCCGTAGATGGTA 31688 | || ||||| ||||| ||| || || ||||||| | | || || || | Sbjct 3370 GACGGATCGGCGACAACTCGGAGAAGGTGGAGGAGCGCTTCACCGAGCAAGTGGACGGAA 3311 Query 31689 TCCCCTACGACTGGAAGTTCCTCTATGGTGTCGCCGGG-TATCACCTCAAG-GCATGTGA 31746 | || ||| |||||||| ||||| || || ||| || || ||||| ||| | || Sbjct 3310 TTGTGTATGACACCAAGTTCCTGTATGGCGT-GCTGGGCTACAACTTCAAGAGCA-GCGA 3253 Query 31747 GATGAATGCCGCCTTTGGTCTCGTCCA 31773 | | || || || ||||| || ||||| Sbjct 3252 GGTCAACGCAGCGTTTGGACTTGTCCA 3226 >seq23882 Length=50760 Score = 105 bits (116), Expect = 8e-18 Identities = 209/304 (69%), Gaps = 4/304 (1%) Strand=Plus/Minus Query 31511 GACATCTCAACTACGAGCTTCTATGCGAGCCACGTCATCACAGCGGGTGGCGTTGGTGGT 31570 |||||| | || || || ||||| ||| ||||||||||| || | ||| || || Sbjct 21377 GACATCGCCACGACCAGTTTCTACGCGTCTCACGTCATCACGGCCTGCGGCTCCGGGGGC 21318 Query 31571 ATGGTCATGTTCAATGACGATGAGCACCTTAAGCGAGCTCTCATGTTTAGGGATTGGGGG 31630 |||||||||||||| || |||| || ||||| || ||||| | | || ||||| Sbjct 21317 ATGGTCATGTTCAACTCGGACAAGCAGCTCAAGCGTGCCACCATGTATCGTGACTGGGGA 21258 Query 31631 CGTATCGGTGACAATATTGAGGAGCCAAGTGAACGCTTCAACCACTCCGTAGATGGTATC 31690 || ||||| ||||| ||| || |||||||||| | || || || ||| Sbjct 21257 CGGATCGGCGACAACTCGGAGAAGGTGGAGGAACGCTTCACTGAGCAGGTGGACGGAATC 21198 Query 31691 CCCTACGACTGGAAGTTCCTCTATGGTGTCGCCGGG-TATCACCTCAAG-GCATGTGAGA 31748 |||||| |||||||| ||||| || || ||| || || ||||| ||| | ||| Sbjct 21197 GTATACGACACCAAGTTCCTGTATGGCGT-GCTGGGCTACAACTTCAAGAGCA-GCGAGG 21140 Query 31749 TGAATGCCGCCTTTGGTCTCGTCCAATTGGATAAGTTGGAGGGGTTCCTTGCCACTCGAC 31808 | || ||||| ||||| || ||||| | ||| | | ||| || || |||||||| | Sbjct 21139 TCAACGCCGCGTTTGGACTTGTCCAGCTCGATCGCCTAGCGGGCTTTCTCGCCACTCGTC 21080 Query 31809 GTCA 31812 | || Sbjct 21079 GACA 21076 Score = 89.7 bits (98), Expect = 6e-13 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 31015 CAAGAAAGTGTGGTATGCGCCCAACAAATTTGAATCATATGGGGAGGAAGAAATTAAAGC 31074 |||||| || | || || ||||| ||||| | || |||||| | || || |||| Sbjct 21915 CAAGAAGGTTTACTACGCTGCCAACGGGTTTGAGGCCTACGGGGAGCAGGAGATGCAAGC 21856 Query 31075 CGTTGAGGATTGCCTTCGCGATGGCTGGCTCGCTGGCTTTGGTGATCGCACTATGGAGTT 31134 |||| |||| ||||| || |||||||||||||||||||| | ||| | || Sbjct 21855 CGTTCAGGAGTGCCTGCGGAGCGGCTGGCTCGCTGGCTTTGGAAGTTACACACAGCGCTT 21796 Query 31135 TGAGAAGAGGGTGGCCGACACATTCGGAAAGAGACACGGACTCTTTGTAAACTCCGG 31191 ||||| | || |||||| ||||| |||| ||||| |||||||| ||||| || Sbjct 21795 TGAGAGACGCGTCGCCGACCTGTTCGGGAAGAAGCACGGCCTCTTTGTGAACTCGGG 21739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613322396293680