Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq19361 174 2e-38 seq23003 154 2e-32 seq23741 138 2e-27 >seq19361 Length=29087 Score = 174 bits (192), Expect = 2e-38 Identities = 333/484 (69%), Gaps = 5/484 (1%) Strand=Plus/Plus Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATG 203896 ||||| || || ||||||| |||||| | ||||| | | | || ||||||||| Sbjct 13255 TCTTGGTCGACGGTGAACTTGATGGCGGCGGCAGCAGGACGCGTACGAAGGTAGTACATG 13314 Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956 |||||||| |||||||| |||| |||| | |||||| |||| || ||| | | Sbjct 13315 CCGGTCTTGAGGCCCTTGCGCCAAGCGTAGAAGTGCATCGAAGTGAGCTTGGCGAAGGAA 13374 Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCG 204016 || || |||||| ||||| || |||||||| ||||||||| | | | || || ||| Sbjct 13375 GGCTCTCCCATGTAGATGTTGAGCGACTGGCTCTGGTCGATGTATGCAGAGCGGTCGGCG 13434 Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGT 204075 ||||| | ||| | | ||||| |||||||||||| |||||| ||| | ||| || Sbjct 13435 GCCATGTCGATGACGACGCGCTGCGGAATCTCCCACACAGTCTTGTACAGCTTCT-TGAG 13493 Query 204076 GTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCC 204134 || | ||| | || | | | || ||| | |||||||||| ||||| ||| | || Sbjct 13494 GTCATCAGGGATCTCGT-CGATGTTCTGCACGGAGCCGTTGTGGGCCACGAGTTTGTTCT 13552 Query 204135 TCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGA 204194 | | || ||||| ||| | ||||| || || | ||||| ||||| || Sbjct 13553 TAAGGGCGGCCGACCACAAGCCTCGCTCCATCAGGTCGCGGAGGAGGTGCTCGTTGACGA 13612 Query 204195 TCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACG 204254 ||||| || | || | | || ||| | | |||| |||| | || ||||| Sbjct 13613 CGGTGAAGTCGCCCGCAAGAATGCGACGTGTGTAGATGTTGGAGGTGTACGGCTCGAAGC 13672 Query 204255 CCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGG 204314 |||||||||||||| |||||||| |||| || || |||||||| |||| ||| |||| Sbjct 13673 ACTCGTTGTTGCCGAGAATCTGAGAGGTGGATGCTGTAGGCATGGGTGCCACGAGGAGGG 13732 Query 204315 AGTT 204318 |||| Sbjct 13733 AGTT 13736 Score = 129 bits (142), Expect = 9e-25 Identities = 463/709 (65%), Gaps = 14/709 (2%) Strand=Plus/Plus Query 204929 TGCTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTC 204988 ||||||||||| |||||| || || ||||||||||| | ||| | ||| | ||| || Sbjct 14260 TGCTGCTGGTTCGACTTGGCATTGCACGAGTCCTTGTAAAGGATGTAAGGCGTGCCGGTC 14319 Query 204989 TCCATCTGAGATCGCAGAATGTGGGTCCACAATTCGCGAGCCTCCACTT-GCTTCACGTA 205047 || ||||| ||| |||||| | ||||| || | |||| || || | | Sbjct 14320 TCGATCTGTGATTCGAGAATGGAGAACCACAGCTCCTGGGCCTTGACGACGCGGCGAGCG 14379 Query 205048 CATCCCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTA-CACGTCCA 205106 | ||||| | |||||| |||| | | | || || ||| | ||| || | Sbjct 14380 CGTCCCTC-ATTCTCGTAGCGCACGTACTTCTCTTCGAACTCCTCACCCCAGCAC-TCGA 14437 Query 205107 TCAGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATC-GTCTTTCACCCTC 205165 || || || || |||||||| | || ||||| ||| || | | | || | | Sbjct 14438 AGAGGCCGGGCGCTTCGTTGGGACAGAAGAGCGACCA-ATCGCCTCCGGCCTCAACGCGC 14496 Query 205166 TCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCG 205225 | ||| |||||||| | |||||||||||| || |||||||| || | | | || Sbjct 14497 TTCATGAACAGGTCCGGCACCCACAGGCCGTAGAAGAGATCACGAGCGCGGTTCTCCTCC 14556 Query 205226 TCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAAC 205285 | ||| ||||||| || | || || || | || ||||||||||||||||| | Sbjct 14557 TTGCCATGGTTCTTCTTGAGCTCAAGGAAATCGAAGATATCGGCGTGCCACGGCTCCAGA 14616 Query 205286 CACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCG 205345 | | || | || || | |||| || ||||| || || ||||| | || Sbjct 14617 TAGATCGCGAACGCTCCCTTACGCTTGCCACCGCCCTGATCAACGTAGCGAGCGGTATCG 14676 Query 205346 TTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCC 205405 ||| | || || ||||| || | || || || | || ||||| |||| | |||| | Sbjct 14677 TTGTAGACACGAAGCATGGGGATGAGTCCATTCGACGTTCCGTTGGTGCCGCGGATGTAC 14736 Query 205406 GAGCCTTC--AGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGA 205463 ||| ||| ||| | | | | | ||| | ||||| || || | | |||||| || Sbjct 14737 GAG--TTCGAAGCGCGGATGCGGTGAACGGCAACTCCAATGCCACCGGCAGACTTGGAGA 14794 Query 205464 TCTGGGCGCACT-CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC 205522 | | ||||||| |||| || ||| ||||||||| ||||||| || ||| || || Sbjct 14795 TGAGAGCGCACTGCTTG-AGCGTGTCGTAGATGCCCTCGATGGAGTCCTCCTTCATCGTG 14853 Query 205523 ACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTG 205582 | ||| ||||||| | ||||| | | |||||||||| |||||| || || || Sbjct 14854 AGCAGGAAGCACGACGACAGCTGCGGACGAGGCGTGCCCGCGTTGAAGAGAGTAGGAGTG 14913 Query 205583 GCGTGGCTGAAGCGCTTCT-CGCTCAAACACCTGTAGGTCTCCAGCACG 205630 ||||| ||||| ||| || || | | | ||| |||||||||||| Sbjct 14914 GCGTGCGTGAAGAGCTGCTGCGAGAGGAGATC-GTATGTCTCCAGCACG 14961 >seq23003 Length=12893 Score = 154 bits (170), Expect = 2e-32 Identities = 335/495 (68%), Gaps = 5/495 (1%) Strand=Plus/Minus Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATG 203896 ||||| || || ||||||| |||||| | ||||||| | | | || ||||||||| Sbjct 2418 TCTTGATCGACAGTGAACTTGATGGCGGTGGCGGCAGGACGCGTACGGAGGTAGTACATG 2359 Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956 || ||||| |||||||| |||| |||| | |||||| |||| || ||| | | Sbjct 2358 CCAGTCTTGAGGCCCTTGCGCCAAGCGTAGAAGTGCATCGAAGTGAGCTTGGCGAAGGAA 2299 Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCG 204016 || ||| |||||| ||||| || |||||||| || |||||| | | | ||||| || Sbjct 2298 GGCTCGCCCATGTAGATGTTGAGGGACTGGCTCTGATCGATGTACGCAGAGCGATCGGCA 2239 Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGT 204075 ||||| | ||| | ||||| |||||||||||| |||||| ||| | ||| || Sbjct 2238 GCCATGTCGATGACTACGCGCTGCGGAATCTCCCACACAGTCTTGTACAGCTTCT-TGAG 2180 Query 204076 GTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCC 204134 | | || | || | | | || ||| | |||||||||| || | ||| | || Sbjct 2179 ATCATCGGGGATCTCGT-CGATGTTCTGCACTGAGCCGTTGTGAGCGACGAGTTTGTTCT 2121 Query 204135 TCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGA 204194 | | || ||||| ||| | ||||| || || | ||||| ||||| || Sbjct 2120 TGAGGGCGGCCGACCACAAGCCTCGCTCCATCAGGTCGCGGAGGAGGTGCTCGTTGACGA 2061 Query 204195 TCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACG 204254 ||||| |||| || | | || ||| | | ||| |||| | || ||||| Sbjct 2060 CGGTGAAGTCGCCGGCAAGAATGCGACGTGTGTAGATATTGGAGGTGTACGGCTCGAAGC 2001 Query 204255 CCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGG 204314 |||||||||||| | |||||| | |||| ||||| |||||||| |||| ||| |||| Sbjct 2000 ACTCGTTGTTGCCAAGAATCTGTGAGGTGGATGCCGTAGGCATGGGCGCCACGAGGAGGG 1941 Query 204315 AGTTGCGCACACCGT 204329 |||| | | ||||| Sbjct 1940 AGTTCCTGAGACCGT 1926 Score = 129 bits (142), Expect = 9e-25 Identities = 315/470 (67%), Gaps = 8/470 (2%) Strand=Plus/Minus Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224 || ||| ||||||||| | ||||||||| || || |||||||| || | | | || Sbjct 1177 CTTCATGAACAGGTCGGGCACCCACAGGCCATAGAAGAGATCACGAGCACGGTTCTCCTC 1118 Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAA 205284 | ||| ||||||| || | || || || | |||||||||||||||||||| | Sbjct 1117 CTTGCCATGGTTCTTCTTGAGCTCAAGGAAATCGAAGATGTCGGCGTGCCACGGCTCCAG 1058 Query 205285 CCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGC 205344 | | || | || || | |||| || ||||| || || ||||| | | Sbjct 1057 ATAGATCGCGAACGCTCCCTTGCGCTTGCCACCGCCCTGATCAACGTAGCGAGCGGTATC 998 Query 205345 GTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGC 205404 |||| |||| || ||||| || | || ||||||| || ||||| |||| | |||| Sbjct 997 GTTGTAAACACGGAGCATGGGGATGAGTCCGTTGGATGTTCCGTTGGTGCCGCGGATGTA 938 Query 205405 CGAGCCTTC--AGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCG 205462 ||| ||| ||| | | | | || ||| | ||||| || || | |||||| | Sbjct 937 GGAG--TTCGAAGCGCGGATGCGGTGGACGGCAACACCAATGCCACCTGCGGACTTGGAG 880 Query 205463 ATCTGGGCGCACT-CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGT 205521 || | ||||||| |||| || ||| ||||||||| ||||||| || ||| || || Sbjct 879 ATGAGAGCGCACTGCTTG-AGCGTGTCGTAGATGCCCTCGATGGAGTCCTCCTTCATCGT 821 Query 205522 CACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCT 205581 | ||| ||||||| | |||| | | |||||||||| |||||| || || | Sbjct 820 GAGCAGGAAGCACGACGAGAGCTGCGGACGAGGCGTGCCCGCGTTGAAGAGAGTAGGAGT 761 Query 205582 GGCGTGGCTGAAGCGCTTCTCGCTCAAACACCT-GTAGGTCTCCAGCACG 205630 |||||| ||||| ||| || | || | | ||||||||||||||| Sbjct 760 GGCGTGCGTGAAGAGCTGCT-GAGAAAGGAGGTCATAGGTCTCCAGCACG 712 >seq23741 Length=113318 Score = 138 bits (152), Expect = 2e-27 Identities = 402/613 (66%), Gaps = 16/613 (3%) Strand=Plus/Minus Query 159652 CTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTCTT 159711 |||||| ||||||||||||||||| | || || ||||| | ||| ||||| | Sbjct 78592 CTCGAAGAAGTTGGTCTTGCCCTCAAGCGAGATGAGCTCCATCCAGGGGAACGGGTTGGT 78533 Query 159712 CACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCGAT 159771 || || ||||| | |||||||| | |||| | || || ||||| ||||| Sbjct 78532 ACTGTTGAAGTGCTTCTCGCAGCCGAGAGCGACGAGCAGACGATCGGCGACAAACTCGAT 78473 Query 159772 GTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACAG 159831 ||| ||||| | | ||| || || | ||| |||||||||| || | | Sbjct 78472 GTACTGGCACATGAGGTTGGCGTTCATGCCGATGAGCGCGACGGGGAGCGACTCAGTGAC 78413 Query 159832 AAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGA-CACGTTCGTACCCCG 159890 |||||||||||||||||||| || || | |||||| | ||||| || | || Sbjct 78412 GAACTCCTTCTCAATCTCGACGGCCTCCAGGATGATCTGCTTGGGCACGTCCG-AGGTCG 78354 Query 159891 GCTTGC---CCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 ||||| | | ||| || | |||||||| |||||||||||||| || |||| Sbjct 78353 GCTTGTTGACGAGCATGCTGT------AGAGGAGGCAAGCAAAGTCGCAGTGAAGACCCT 78300 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 | || || ||||| |||||| || | | || || ||||||| || ||| |||| Sbjct 78299 CATCGCGGCTGATGAGCTCGTTCGAGAAGGCAAGACCAGGCATGAGGCCGCGCTTCTTGA 78240 Query 160008 GCCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 |||| || |||| |||| ||| | || || ||||| ||||| || || || || | Sbjct 78239 GCCAGAAGATGG-CGCAGAAGGAGCCAGAGAAGAAGATGCCCTCGACAGCGGCGAAGCCG 78181 Query 160067 ACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGG---TCCACCTTTTGGCCCATTCA 160123 || || | ||| |||| | || | ||| | || ||||| | |||||| || Sbjct 78180 ACCAGACGCTCCGCAAAGGTCTCGACGCCGTCCTTGGCAATCCACTTCAGGGCCCACTCC 78121 Query 160124 GCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTC 160183 |||||||| || | | || ||||| ||| |||| | |||| |||| | Sbjct 78120 GCCTTCTTCTTGACCGAGGCCACCGTCTCGATGGCACGGAACAGGCGATCCTTCTCCACC 78061 Query 160184 ACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATG 160243 | ||||| | || | ||||| |||||||||||| | ||| | || || ||| Sbjct 78060 GCGTCCTTTACGTACGTGTCGATCAGGAGCGAGTACATTTCCGAGTGAATGTTCTCAATG 78001 Query 160244 GCCATCTGAAAGT 160256 || ||||| |||| Sbjct 78000 GCGATCTGCAAGT 77988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794915679374880