Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq22901 86.0 2e-11 >seq22901 Length=26441 Score = 86.0 bits (94), Expect = 2e-11 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCAT-C 391108 ||| | || ||| | || || || ||||| || | | || | ||||| || || | | Sbjct 2754 ATGCAGATCTTCATCAAGACCCTCACTGGCAAGTCCGTAACCGTGGATGT-GAGTCCTTC 2812 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| |||||||||| | || || | || || ||||||||||||||||| ||||| Sbjct 2813 CGATACCATTGAAGCTGTCAAGGCTAAGCTGCAGGACAAGGAAGGAATTCCTCCCGATCA 2872 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || || || || || | || ||||| || || || || | || | || || ||||| Sbjct 2873 GCAGCGCTTGATCTTTGCTGGCAAACAGCTGGAGGACGGCCGTACGCTCGCCGAGTATAA 2932 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 ||| | ||||| | || |||||||| || || | ||| | ||| Sbjct 2933 CATTCAGAAGGAATCCACCCTTCACTTGGTGCTACGCCTGCGCGGA 2978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975108385830584