Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq19361 176 6e-39 seq23741 140 4e-28 seq23882 91.5 2e-13 seq21891 86.0 8e-12 >seq19361 Length=29087 Score = 176 bits (194), Expect = 6e-39 Identities = 457/683 (67%), Gaps = 23/683 (3%) Strand=Plus/Minus Query 111546 TATTTTGGTCTCAAGACCCTCGAGAAAAGCT---ACCTCCA-AAGACTGGATGGTGTCTT 111601 || |||||| ||||||||||||| | ||| ||||| |||| || | || ||| | Sbjct 15083 TACTTTGGTTTCAAGACCCTCGA---ACGCTCGTACCTCTTCAAGATTG-ACGGAGTCAT 15028 Query 111602 GATGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATAT 111661 |||| || ||| ||||| ||||| ||||||| |||| | || ||| | || Sbjct 15027 CGTGGAGCGGCCGCAGCACATGCTCATGAGGGTCGCCGTCGGCCTTCACACGGACAACAT 14968 Query 111662 TGATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACC 111721 | || ||||||||||||| | || | | |||| ||||| || || Sbjct 14967 CCCCGCCGTGCTGGAGACATACGATCTCCTCTCGCAGCAGCTCTTCACGCACGCCACTCC 14908 Query 111722 AACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAA 111781 || ||||||||||| || || || | || || |||| || ||||| | | | Sbjct 14907 TACTCTCTTCAACGCGGGCACGCCTCGTCCGCAGCTGTCGTCGTGCTTCCTGCTCACGAT 14848 Query 111782 CAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAA 111841 |||||||| || ||| | ||||| |||| ||| |||| | || || | ||||| || Sbjct 14847 GAAGGAGGACTCCATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCTCTCATCTCCAA 14788 Query 111842 GTGGGCTGGTGGTATCGG-GATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--T 111898 || || ||||| || || | ||| | | || || | || || |||||| | Sbjct 14787 GTCTGCCGGTGGCATTGGAGTTGC-CGTTCACCGCATCCGCGCTTCGAA--CTCGTACAT 14731 Query 111899 TAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCAC 111958 | || || || || || |||| | || || |||||||| || | |||| || Sbjct 14730 CCGCGGCACCAACGGAACGTCGAATGGACTCATCCCCATGCTTCGTGTCTACAACGATAC 14671 Query 111959 AGCGCGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGA 112015 || ||||| || | || | || | || |||||| | |||| ||||||| || Sbjct 14670 CGCTCGCTACGTTGATCAGGGCGGTGGCAAGCGTAAGGGAGCGTTCGCGATCTATCTGGA 14611 Query 112016 GCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGA 112075 ||| |||||||| |||||| | || ||||||||| | ||||| || | ||||| Sbjct 14610 GCCGTGGCACGCCGATATCTTCGATTTCCTTGAGCTCAAGAAGAACCATGGCAAGGAGGA 14551 Query 112076 GG--CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGA 112133 | |||| | || |||||||||| || || ||| | || || || ||||||||| | Sbjct 14550 GAACCGCGCT--CGTGATCTCTTCTACGGCCTGTGGGTGCCGGACCTGTTCATGAAGCGC 14493 Query 112134 GTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA- 112192 ||||||| | ||| ||||||| ||||| ||||| || | || ||||| |||| ||| Sbjct 14492 GTTGAGGCCGGAGGCGATTGGTCGCTCTTCTGTCCCAACGAAGCGCCCGGCCTCTTCGAG 14433 Query 112193 TGCCGTGGGTGAGGAGTTTGAAG 112215 ||| | |||||||||||| |||| Sbjct 14432 TGCTG-GGGTGAGGAGTTCGAAG 14411 >seq23741 Length=113318 Score = 140 bits (154), Expect = 4e-28 Identities = 163/216 (75%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 102122 TCAA-AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG-CGTT----CCTT 102175 |||| ||||| ||||| ||||| |||||||| ||| ||| | || ||| |||| Sbjct 78108 TCAAGAAGAAGGCGGAGTGGGCCCTGAAGTGGATTGC--CAAGGACGGCGTCGAGACCTT 78165 Query 102176 TGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTG 102235 ||| ||||| || ||| || || ||| ||||| |||||||||||||| |||||||| Sbjct 78166 TGCGGAGCGTCTGGTCGGCTTCGCCGCTGTCGAGGGCATCTTCTTCTCTGGCTCCTTCTG 78225 Query 102236 CGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCT 102295 ||| || | |||||||||||||| || |||||||| ||||| |||||| |||||||| Sbjct 78226 CGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTTGCCTTCTCGAACGAGCT 78285 Query 102296 TATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||| || || ||||| || ||| || ||||| Sbjct 78286 CATCAGCCGCGATGAGGGTCTTCACTGCGACTTTGC 78321 >seq23882 Length=50760 Score = 91.5 bits (100), Expect = 2e-13 Identities = 188/272 (69%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 35031 GACATCTCCACGACGAGTTTCTACGCGAGCCATGTGATTACCGCGGGTGGTGTTGGTGGT 35090 |||||| ||||||| |||||||||||| || || || || || | || || || Sbjct 21377 GACATCGCCACGACCAGTTTCTACGCGTCTCACGTCATCACGGCCTGCGGCTCCGGGGGC 21318 Query 35091 ATGGTGATGTTCAATGACGAAGAACAACTCAAGAGAGCCCTCATGTTTAGGGATTGGGGT 35150 ||||| |||||||| || | || |||||| | ||| ||||| | | || ||||| Sbjct 21317 ATGGTCATGTTCAACTCGGACAAGCAGCTCAAGCGTGCCACCATGTATCGTGACTGGGGA 21258 Query 35151 CGCATCGGTGATAATGTAGAAGAACCTGGA-GAACGCTTCAACCACTCCGTAGATGGAAT 35209 || ||||| || || | | |||| |||| |||||||||| | || || ||||| Sbjct 21257 CGGATCGGCGACAA-CTCGGAGAAGGTGGAGGAACGCTTCACTGAGCAGGTGGACGGAAT 21199 Query 35210 CCCATACGATTGGAAGTTTCTCTACGGTGTCGCT-GGATATCACCTCAA-AGCTTGTGAG 35267 | |||||| ||||| || || || || ||| || || || |||| ||| | ||| Sbjct 21198 CGTATACGACACCAAGTTCCTGTATGGCGT-GCTGGGCTACAACTTCAAGAGC-AGCGAG 21141 Query 35268 ATGAACGCGGCATTTGGTCTCGTACAACTTGA 35299 | ||||| || ||||| || || || || || Sbjct 21140 GTCAACGCCGCGTTTGGACTTGTCCAGCTCGA 21109 Score = 91.5 bits (100), Expect = 2e-13 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 34537 AGAAAGTTTGGTATGCGCCCAACAAATTTGAATCATATGGGGAGGAAGAAATTAAAGCCG 34596 |||| |||| || || ||||| ||||| | || |||||| | || || |||||| Sbjct 21913 AGAAGGTTTACTACGCTGCCAACGGGTTTGAGGCCTACGGGGAGCAGGAGATGCAAGCCG 21854 Query 34597 TTGAGGCTTGCCTTCGCGATGGCTGGCTCGCTGGTTTTGGTGATCGCACTGTGGAATTTG 34656 || ||| ||||| || |||||||||||||| ||||| | ||| | |||| Sbjct 21853 TTCAGGAGTGCCTGCGGAGCGGCTGGCTCGCTGGCTTTGGAAGTTACACACAGCGCTTTG 21794 Query 34657 AGAAACGGGTTGCGGACATATTCGGGAAGAGACATGGACTCTTTGTAAACTCTGG 34711 ||| ||| || || ||| | |||||||||| || || |||||||| ||||| || Sbjct 21793 AGAGACGCGTCGCCGACCTGTTCGGGAAGAAGCACGGCCTCTTTGTGAACTCGGG 21739 >seq21891 Length=78955 Score = 86.0 bits (94), Expect = 8e-12 Identities = 169/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 176018 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 176077 |||||||||||||| ||||| ||||||| |||| || | || | ||||| Sbjct 49354 GCATCCTTACCACCTTGAAGACGGCTACCAAAGCTACCAGCGGGATAGAGGACGTTGATG 49413 Query 176078 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCA 176137 ||||| || || | | || || ||||| |||||| || | ||||| | ||| Sbjct 49414 TTGTTCGAGCCGACGAAGCTATGCGCCATACCGACAATAGTCTTATTCAGAGACTCCTCA 49473 Query 176138 CCGTGGTGGTACGCACTCTTCTCTGCGACAAAT-GCCGCCAA-CTGCGCCACTTTCATCT 176195 || |||||||| || | | | | |||| | ||||| || ||| |||||| |||| Sbjct 49474 CCATGGTGGTATGC-CGAGTGT-AGAGACACGTAGCCGCTAAGCTGGGCCACTCGGATCT 49531 Query 176196 CATCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGAC 176255 | ||||||| |||||| ||| || | ||||| | ||||||||| |||||| |||| Sbjct 49532 CCTCCTTGATGTTCTTGCTGAAGCAAGTGTACAAGATCTTGCGTTGACCAGGCTTAAGAC 49591 Query 176256 CATCC 176260 | ||| Sbjct 49592 CGTCC 49596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620555416870560