Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq19361 214 2e-50 seq23003 181 1e-40 seq23741 107 2e-18 seq21891 82.4 9e-11 >seq19361 Length=29087 Score = 214 bits (236), Expect = 2e-50 Identities = 621/941 (66%), Gaps = 19/941 (2%) Strand=Plus/Plus Query 106447 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 106506 ||| ||||| ||||| |||| || || | ||||| || || |||||| | || Sbjct 14151 GACGTACTTCGGAAGAGCGAGCGACGCGAGGTTGCACACTGCGACCTCATCAGGAGACGT 14210 Query 106507 GTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 106566 | ||| | | || || |||||||| || || || || || | | || ||||| Sbjct 14211 GAACTGAATGACCTCCGTGCACAAGTTCGAGGACTGGATGGTGCCGAGGTGCTGCTGGTT 14270 Query 106567 ACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 106626 ||| ||||||| |||||||| || ||||| ||||| || ||||| ||||||| Sbjct 14271 CGACTTGGCATTGCACGAGTCCTTGTAAAGGATGTAAGGCGTGCCGGTCTCGATCTGTGA 14330 Query 106627 CTTGAGAATTGCCTTCCACACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGC 106686 | |||||| | ||||| || ||| || | | | || |||||||| Sbjct 14331 TTCGAGAATGGAGAACCACAGCTCCTGGGCCTTGACGACGCGGCGAGCGCGTCCCTCATT 14390 Query 106687 CTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTG 106745 |||||| ||| |||| |||||||||||| | || ||| |||| || || | Sbjct 14391 CTCGTAGCGCACGTACTTCTCTTCGAACTCCTCACCC-CAGCACTCGAAGAGGCCGGGCG 14449 Query 106746 CCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGT 106805 | | || |||||||| || ||||| | || || ||||||| ||||||||||| |||| Sbjct 14450 CTTCGTTGGGACAGAAGAGCGACCAATCGCCTCCGGCCTCAACGCGCTTCATGAACAGGT 14509 Query 106806 CTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGA 106865 | || | ||||||| | |||||||| | | || ||| || | || ||||| Sbjct 14510 CCGGCACCCACAGGCCGTAGAAGAGATCACGAGCGCGGTTCTCCTCCTTGCCATGGTT-C 14568 Query 106866 GTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATA 106924 || | | ||||||||| || | |||||| |||||||| ||||| ||||||| |||| Sbjct 14569 TTCTTGAGCTCAAGGAAATCGAAGATATCGGCGTGCCACGGCTCCAGATAGATCGCGAAC 14628 Query 106925 GATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGA 106981 | |||||| || | || | |||| || ||||| || || |||| | || ||| Sbjct 14629 GCTCCCTTACGCTTGCCACCGCCCTGATCAACGTAGCGAGCGGTATCGTTGTAGACACGA 14688 Query 106982 AGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAA--TACGAGATTTATTGG 107039 ||||| || || | |||| || || || || || || | |||||| || | Sbjct 14689 AGCATGGGGATGAGTCCATTCGACGTTCCGTTGGTGCCGCGGATGTACGAG--TTCGAAG 14746 Query 107040 CTCTCACATCATGGATGTGCATC-CCAATACCCCCAGCCCACTTTGAGATTTGCGCACAC 107098 | | | || | | ||| | ||||| || || || |||| ||||| | || ||| Sbjct 14747 CGCGGATGCGGTGAACG-GCAACTCCAATGCCACCGGCAGACTTGGAGATGAGAGCGCAC 14805 Query 107099 TCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAA 107158 | | | || || | ||||| || | ||| ||||||||||| | | || |||||||| Sbjct 14806 TGCTTGAGCGTGTCGTAGATGCCCTCGATGGAGTCCTCCTTCATCGTGAGCAGGAAGCAC 14865 Query 107159 CTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAAC 107218 |||| |||||| | || || || || |||||||| || || || ||||| |||| Sbjct 14866 GACGACAGCTGCGGACGAGGCGTGCCCGCGTTGAAGAGAGTAGGAGTGGCGTGCGTGAAG 14925 Query 107219 ATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATG 107278 | || || | ||||||||||||| || | |||| ||| ||| | | Sbjct 14926 AGCTGCTGCGAGAGGAGATCGTATGTCTCCAGCACGGCGGGGATGTTGTCCGTGTGAAGG 14985 Query 107279 CCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGT 107338 |||| ||| || | ||| | ||||| || || |||| || || || || | | | Sbjct 14986 CCGACGGCGACCCTCATGAGCATGTGCTGCGGCCGCTCCACGATGACTCCGTCAATC--T 15043 Query 107339 TGAAGA--TA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376 |||||| || | | | || ||||| |||| ||||||||| Sbjct 15044 TGAAGAGGTACGAGCGT-TCGAGGGTCTTGAAACCAAAGTA 15083 >seq23003 Length=12893 Score = 181 bits (200), Expect = 1e-40 Identities = 614/941 (65%), Gaps = 19/941 (2%) Strand=Plus/Minus Query 106447 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 106506 ||| ||||| ||||| |||| || || | ||||| ||||| |||||| | || Sbjct 1522 GACGTACTTGGGAAGAGCGAGCGACGCGAGGTTGCACACAGCGACCTCATCAGGAGACGT 1463 Query 106507 GTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 106566 ||||| | | || || |||||||| || || || || || | | || ||||| Sbjct 1462 GTACTGAATGACCTCCGTGCACAAGTTCGAGGACTGGATGGTGCCAAGGTGCTGCTGGTT 1403 Query 106567 ACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 106626 ||| ||||||| |||||| ||||| ||||| ||||| || ||||| |||| || Sbjct 1402 CGACTTGGCATTGCACGAATCCTTATAGAGGATGTAAGGCGTGCCGGTCTCGATCTGCGA 1343 Query 106627 CTTGAGAATTGCCTTCCACACATCGGCGGCTGGTACAAT--GGCGTTGGCCCGTCCCTCC 106684 || |||||| | ||||| || ||| || | |||| || || || || Sbjct 1342 CTCGAGAATGGAGAACCACAGCTCCTGGGCCTTGACGACACGGCGA--GCGCGGCCTTCG 1285 Query 106685 GCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGG 106743 |||||| ||| | || ||||| || ||| | || ||| |||| ||||| Sbjct 1284 TTCTCGTAACGCACGTACTTCTCCTCGAACTCGTCGCCC-CAGCACTCGAAGAGGCCTGG 1226 Query 106744 TGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAG 106803 || | || || ||||| || ||||| | || || |||| || ||||||||||| || Sbjct 1225 CGCTTCGTTGGGGCAGAAGAGCGACCAGTCGCCTCCGGCCTCGACGCGCTTCATGAACAG 1166 Query 106804 GTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTT 106863 ||| || | ||||||| | |||||||| | | || ||| || | || ||||| Sbjct 1165 GTCGGGCACCCACAGGCCATAGAAGAGATCACGAGCACGGTTCTCCTCCTTGCCATGGTT 1106 Query 106864 GAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA 106922 || | | ||||||||| || | ||| || |||||||| ||||| ||||||| |||| Sbjct 1105 -CTTCTTGAGCTCAAGGAAATCGAAGATGTCGGCGTGCCACGGCTCCAGATAGATCGCGA 1047 Query 106923 TAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGC 106979 | |||||| || | || | |||| || ||||| || || |||| | || | Sbjct 1046 ACGCTCCCTTGCGCTTGCCACCGCCCTGATCAACGTAGCGAGCGGTATCGTTGTAAACAC 987 Query 106980 GAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGG 107039 | ||||| || || | || | ||| || || || || || || || || | Sbjct 986 GGAGCATGGGGATGAGTCCGTTGGATGTTCCGTTGGTGCCGCGGATGTAGGAGTTCGAAG 927 Query 107040 CTCTCACATCATGGATGTGCATC-CCAATACCCCCAGCCCACTTTGAGATTTGCGCACAC 107098 | | | |||| | ||| | ||||| || || || |||| ||||| | || ||| Sbjct 926 CGCGGATGCGGTGGACG-GCAACACCAATGCCACCTGCGGACTTGGAGATGAGAGCGCAC 868 Query 107099 TCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAA 107158 | | | || || | ||||| || | ||| ||||||||||| | | || |||||||| Sbjct 867 TGCTTGAGCGTGTCGTAGATGCCCTCGATGGAGTCCTCCTTCATCGTGAGCAGGAAGCAC 808 Query 107159 CTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAAC 107218 || | |||||| | || || || || |||||||| || || || ||||| |||| Sbjct 807 GACGAGAGCTGCGGACGAGGCGTGCCCGCGTTGAAGAGAGTAGGAGTGGCGTGCGTGAAG 748 Query 107219 ATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATG 107278 | || || | ||| || ||||||| || | |||| ||| ||| | | Sbjct 747 AGCTGCTGAGAAAGGAGGTCATAGGTCTCCAGCACGGCGGGGATGTTGTCCTTGTGAAGG 688 Query 107279 CCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGT 107338 || | ||| || | ||| | ||||| || || |||| || || || |||| | | Sbjct 687 CCCACGGCGACCCTCATGAGCATGTGCTGCGGCCGCTCCACGATGACTCCGTCGATC--T 630 Query 107339 TGAAGA--TA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376 |||||| || | | | || ||||| |||| ||||||||| Sbjct 629 TGAAGAGGTACGAGCGT-TCGAGGGTCTTGAAACCAAAGTA 590 >seq23741 Length=113318 Score = 107 bits (118), Expect = 2e-18 Identities = 267/396 (67%), Gaps = 17/396 (4%) Strand=Plus/Minus Query 117096 GAGGAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 117155 ||| |||||||| | ||| |||| ||||||| | |||| | | |||||| ||||| Sbjct 78499 GAGCAGACGATCGGCGACAAACTCGATGTACTGGCACATGAGGTTGGCGTTCATGCCGAT 78440 Query 117156 GAGATTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCAC 117215 ||| ||||| | || || |||| | ||||||||||| || ||||| || Sbjct 78439 GAGCGCGACGGGGAGCGACTCAGTGACGAACTCCTTCTCAATCTCGACGGCCTC---CAG 78383 Query 117216 GATG----GCGTGGATAGTTTCGGTAGTGGGTCTATT-ACG--CAAAGTCTTGAAGAGCT 117268 |||| || ||| | | || || || | || ||| || | | || ||| Sbjct 78382 GATGATCTGCTTGGGCACGTCCGAG-GTCGGCTTGTTGACGAGCATGCTGTAGAGGAGG- 78325 Query 117269 CCACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATA 117328 || | |||| || ||| ||||||||||| ||| || || || || |||||| | Sbjct 78324 -CAAG-CAAAGTCGCAGTGAAGACCCTCATCGCGGCTGATGAGCTCGTTCGAGAAGGCAA 78267 Query 117329 GGCCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGA 117388 | || |||||||| || |||||||| | ||| | || |||||||| || || ||||||| Sbjct 78266 GACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCAGAGAAGA 78207 Query 117389 AGATACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG-AGCGAGAC--TTTG 117445 |||| ||||| ||| || || | | || ||||| || |||| ||| | | Sbjct 78206 AGATGCCCTCGACAGCGGCGAAGCCGACCAGACGCTCCGCAAAGGTCTCGACGCCGTCCT 78147 Query 117446 TGTCAAACCATTTCATTGCCCATTTCGCCTTCTTCT 117481 || ||| ||| |||| ||||| | ||||||||||| Sbjct 78146 TGGCAATCCACTTCAGGGCCCACTCCGCCTTCTTCT 78111 >seq21891 Length=78955 Score = 82.4 bits (90), Expect = 9e-11 Identities = 215/314 (68%), Gaps = 32/314 (10%) Strand=Plus/Plus Query 169215 TCTGTCATAATCATAAGACGACCATAGCGAAGTTCAGAAACAT----CTTG-GTAGTCTT 169269 || ||||| ||||| |||||||||||||| |||| | | |||| ||| ||| Sbjct 50292 TCGGTCATGATCATCAGACGACCATAGCG-----CAGACCCTTTGGGCTTGTGTA--CTT 50344 Query 169270 TTCCTTG---TTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTC----TTGGT-TTGA 169321 || ||| ||| | ||||||||||| | ||| | | |||||| ||| | ||| Sbjct 50345 TTGATTGGGCTTG-ATACCCAAGATCTGCATGATTTGGCCGAACTCGGCGTTGTTCATGA 50403 Query 169322 TGTGAGCTGTGCCACTGAAGCGTCGCGGACATTCTTAC-ACTTCCCACGGAGAGGAAAGA 169380 | |||| | ||| | ||||||||| ||||| | || ||| || ||| ||||| | Sbjct 50404 TCTGAG-TATGC----GTAGCGTCGCGAACATT-TAACGGCTTGCCCTTGAGCGGAAATA 50457 Query 169381 CGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGACCGCAAGGGTTTTCGCTGAAT 169440 |||| ||| | || || || || || | ||| || || || | ||||| ||||| | Sbjct 50458 CGCCGTAGCGGTCGCGCCCTACAACCGCGAGGCCGCTCACAGCCAACGTTTTGGCTGAGT 50517 Query 169441 CACCCTCCGTGACAATGAGGGTACACTT-TCCAGATT-GCGCCGTACCCGCCTTGTTTGC 169498 | || ||||||| |||||| || ||||| || ||| ||| || |||| || || Sbjct 50518 CTCCTTCCGTGAGAATGAGCGTGCACTTCTCTGCATTCTTTCCG--CCGGCCTCATTAGC 50575 Query 169499 GTCGTCCAACTTGG 169512 ||| || ||||||| Sbjct 50576 GTCATCTAACTTGG 50589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589803083033520