Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq22955 86.0 5e-12 seq22211 86.0 5e-12 >seq22955 Length=9686 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| ||||| || ||||| || | || | ||| |||| || | |||||||||||| || Sbjct 8189 CTCCTTTTGGATGTTGTAGTCGGCAAGCGTACGACCGTCCTCAAGCTGCTTACCGGCGAA 8248 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| || || | ||||| ||||||||||| ||||| || || || Sbjct 8249 GATAAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 8308 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || ||| || || | ||||| || || || |||||||| || || Sbjct 8309 CTCGATGGTATCGCTCGACTCGACTTCGAGAGTAATGGTCTTACCGGTCAAAGTCTTGAC 8368 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 8369 GAAGATCTGCAT 8380 >seq22211 Length=15201 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| |||||||| ||||| || | || | ||| |||| || | |||||| ||||| || Sbjct 4394 CTCCTTTTGAATGTTGTAGTCGGCCAGCGTACGACCGTCCTCAAGCTGCTTGCCGGCGAA 4335 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| || || | |||| ||||||||||| |||||| || || || Sbjct 4334 GATGAGGCGCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTCTGCTTCACGTT 4275 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || ||| || || | ||||| || || || |||||||| || || Sbjct 4274 CTCGATGGTATCGCTCGACTCGACTTCGAGAGTAATGGTCTTACCGGTCAAAGTCTTGAC 4215 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 4214 GAAGATCTGCAT 4203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380825720769654