Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_019405.1 Length=215710 Score E Sequences producing significant alignments: (Bits) Value seq19604 116 5e-21 seq21124 113 6e-20 >seq19604 Length=58456 Score = 116 bits (128), Expect = 5e-21 Identities = 113/144 (78%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 136646 AGCCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGGG 136705 |||||||||||||||| || |||||||| ||||| || ||| ||||||||||| |||| Sbjct 10606 AGCCCTTCACGCAGAGCACCTGCTTGAGCGTGTGCACTATGGCCACGAGGTCCGATTGGG 10547 Query 136706 CCTCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCACGCCAGCGT 136765 | | ||| |||| |||||||||||| ||||| ||| ||||||||| ||| | | || Sbjct 10546 CGTTCATTACCGAGTCGATGTCCTTATAGGCTCGCGGCGTTTCGTCGAGGACGTCCGGGT 10487 Query 136766 CCTTGCGGCACTCCACGCC-CTCG 136788 | | ||||| || || || |||| Sbjct 10486 CGTGTCGGCATTCAACCCCGCTCG 10463 >seq21124 Length=65888 Score = 113 bits (124), Expect = 6e-20 Identities = 112/144 (78%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 136646 AGCCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGGG 136705 |||||||||||||||| || |||||||| ||||| || || || ||||||||| |||| Sbjct 17257 AGCCCTTCACGCAGAGCACCTGCTTGAGCGTGTGTACTATCTCTACGAGGTCCGATTGGG 17198 Query 136706 CCTCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCACGCCAGCGT 136765 | | ||| |||| |||||||||||| ||||| ||| ||||||||| ||| | | || Sbjct 17197 CGTTCATTACCGAGTCGATGTCCTTATAGGCTCGCGGCGTTTCGTCGAGGACGTCCGGGT 17138 Query 136766 CCTTGCGGCACTCCACGCC-CTCG 136788 | | ||||| || || || |||| Sbjct 17137 CGTGTCGGCATTCAACCCCGCTCG 17114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 689936111373600