Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq23003 214 3e-50 seq19361 196 9e-45 seq23741 181 2e-40 >seq23003 Length=12893 Score = 214 bits (236), Expect = 3e-50 Identities = 742/1136 (65%), Gaps = 49/1136 (4%) Strand=Plus/Minus Query 221503 AAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAA-- 221560 |||||||||||| || ||||| || || | |||||| || | ||| | | |||| || Sbjct 1690 AAAGACGTCGGCAAGACCCTGAACACCAAGACCGATCGGACGGTGGCGCATGTTCGAGTT 1631 Query 221561 GCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTG 221620 |||| || || || || || || |||||| |||||||| ||||||||||| | ||| Sbjct 1630 GCGG--GCCTCAGGGACTGGGTAGTAGTTGATGTCGATCACCTTGTTGAGGTTGCGGGTG 1573 Query 221621 ATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGG 221680 | ||||| ||||| ||| ||||||| ||||| |||| | | || ||| | | Sbjct 1572 ACTACTTTGACCACGTCGTAGAGCTTCTTGTGATCGAACTGTCCGTTGACGACGTACTTG 1513 Query 221681 AGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCC 221740 | || |||| || |||| ||||| ||||| || ||||| || Sbjct 1512 GG---------AAGAGCGA-----GCGACGCG----AGGTTGCACACAGCGACCTCATCA 1471 Query 221741 TTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGA 221800 || ||||| |||| ||| || || | ||| | ||| |||||| || ||||| Sbjct 1470 GGAGACGTGTACTGAATGACCTCCGTGCACAAGTTCGAGGACTGGATGGTGCCAAGGTGC 1411 Query 221801 TTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCC 221860 | || || |||||| |||| | ||||| ||||| || | || ||| ||||| Sbjct 1410 TGCTGGTTCGACTTGGCATTGCACGAATCCTTATAGAGGATGTAAGGCGTGCCGGTCTCG 1351 Query 221861 AGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCA 221920 | ||| | | | ||||| | ||| || || |||| || || | || || Sbjct 1350 ATCTGCGACTCGAGAATGGAGAACCACAGCTC-CTGGGCCTTGACGACACGGCGAGCGCG 1292 Query 221921 CCCT-CGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTC 221979 ||| || ||| | | | || || | || |||| || || | |||| Sbjct 1291 GCCTTCGTTCTCGTAACGCACG---TACTTCTCCTCGAACTCGTCGCCCCAGCACTCGAA 1235 Query 221980 CAGGCCTGGACACCTGGC-GGGACACATCAGACTCCAGT-GCTTGTTGTCTTTGACCCTC 222037 |||||||| | | | | ||| || | || ||||| || | | || ||| | | Sbjct 1234 GAGGCCTGG-CGCTTCGTTGGGGCAGAAGAGCGACCAGTCGCCTCCGGCCTC-GACGCGC 1177 Query 222038 TGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCC 222097 | |||||| ||||| || | |||||| | | |||||||| | | || | ||||||| Sbjct 1176 TTCATGAACAGGTCGGGCACCCACAGGCCATAGAAGAGATCACGAGCACGGTTCTCCTCC 1117 Query 222098 ACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGA 222157 ||| | ||| ||| | || || | || || || ||||| |||||||||||||||||| Sbjct 1116 TTGCCATGGTTCTTCTTGAGCTCAAGGAAATCGAAGATGTCGGCGTGCCACGGCTCCAGA 1057 Query 222158 TAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCG 222217 |||| || | || || |||||| || |||||||| || | | | || Sbjct 1056 TAGATCGCGAACGCTCCCTTGCGCTTGCCACCGCCCTGATCAACGTAGCGAGCGGTATCG 997 Query 222218 TTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTA- 222276 ||| | | || || | || | |||||||||||| ||||||||||| ||||| Sbjct 996 TTGTAAACACGGAGCATGGGGATGAGTCCGTTGGATGTTCCGTTGGTGCCGCGGATGTAG 937 Query 222277 -----CGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCCGATACCACCGGCGTGTTTC 222331 || | ||| | | || || |||| ||| || || ||||| ||| || Sbjct 936 GAGTTCGAAGCGCGGATGCGGTGG--AC-GGCA-ACA--CCAATGCCACCTGCGGACTTG 883 Query 222332 GAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACG 222391 ||||| | ||||| |||||| ||||| ||||||||| || ||||||||||| | Sbjct 882 GAGATGAGAGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATGGAGTCCTCCTTCATC 823 Query 222392 TTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGA 222451 | ||||| || || ||||| | ||| | | | | ||||| || || || ||| Sbjct 822 GTGAGCAGGAAGCACGACGAGAGCTGCGGACGAGGCGTGCCCGCGTTGAAGAGAGTAGGA 763 Query 222452 CTGGCGTGTGTAAAGTAGCCCCT-AGACATCAGATCGTACGTCTCTACGACTCTGGCGAT 222510 ||||||| || ||| ||| || ||| | || || || ||||| | || || ||| Sbjct 762 GTGGCGTGCGTGAAG-AGCTGCTGAGAAAGGAGGTCATAGGTCTCCAGCACGGCGGGGAT 704 Query 222511 GTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCTCCAC-AG 222569 ||||||| ||||| || |||| |||||| ||||| ||| |||| |||||| | Sbjct 703 GTTGTCCTTGTGAAGGCCCACGGCGACCCTCATGAGCATGTGCTGCGGCCGCTCCACGAT 644 Query 222570 GAC-CCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTA 222624 ||| || | || || || || |||||||| ||| || |||||||| |||||||| Sbjct 643 GACTCCGTCGATCTTGA-AG-AGGTACGAGCGTTCGAGGGTCTTGAAACCAAAGTA 590 >seq19361 Length=29087 Score = 196 bits (216), Expect = 9e-45 Identities = 795/1224 (65%), Gaps = 53/1224 (4%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTG-TTGAGTCTCTTGG-CCTCG- 221473 || || ||||||| |||||||||||| ||||| | | | ||||| ||| || |||| Sbjct 13897 GTGAGTGCAGCGTAGTAGATGGTCTCGAAGAT-AGCGCGATTGAG-CTCGCGGGCCTCCT 13954 Query 221474 GGAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATA 221533 || | ||||| |||| | | ||||||||||| || ||||| || || | | Sbjct 13955 GGCTCTCCCATGGGCAG-CGCATGAGCATGAAGACGTCGGCAAGACCCTGAACACCAAGA 14013 Query 221534 CCGATGGGCCTGTGTCTCCTGTTGGAA--GCGGCCGCTTCTGGCACGGGATAAAAGTTGA 221591 ||||| || | ||| | | |||| || |||| || || || ||||| |||||| Sbjct 14014 CCGATCGGGCGGTGACGCATGTTCGAGTTGCGG--GCCTCAATGACTGGATAGTAGTTGA 14071 Query 221592 CGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGT 221651 |||||||| ||||||||||| | |||| ||| || ||||| ||| ||||||| || Sbjct 14072 TGTCGATCACCTTGTTGAGGTTGCGCGTGACGACCTTGACCACGTCGAAAAGCTTCTTGT 14131 Query 221652 GATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC 221711 ||| |||| ||||| | || | | | || |||| || |||| Sbjct 14132 GATCGAACTG---------GCCGTTGACGACGTACTTCGGAAGAGCGA-----GCGACGC 14177 Query 221712 TGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGA 221771 ||||| ||||| || ||||| || || |||| |||| ||| || || | Sbjct 14178 G----AGGTTGCACACTGCGACCTCATCAGGAGACGTGAACTGAATGACCTCCGTGCACA 14233 Query 221772 GGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCT 221831 ||| | ||| |||||| || ||||| | || || |||||| |||| | ||||| Sbjct 14234 AGTTCGAGGACTGGATGGTGCCGAGGTGCTGCTGGTTCGACTTGGCATTGCACGAGTCCT 14293 Query 221832 TGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTT 221891 |||| || || | || ||| ||||| | ||| | | ||||| | ||| || | Sbjct 14294 TGTAAAGGATGTAAGGCGTGCCGGTCTCGATCTGTGATTCGAGAATGGAGAACCACAGCT 14353 Query 221892 CTCTGGCGCTCACCGTCCTCTTGACTGCA-CCCTCGGTCTTTTCATACCCGGTATAGAGC 221950 | |||| || || | || || ||||| ||| | | || || | Sbjct 14354 C-CTGGGCCTTGACGACGCGGCGAGCGCGTCCCTCATTCTCGTAGCGCACG---TACTTC 14409 Query 221951 ATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGC-GGGACACATCAG 222009 || |||| ||||| | |||| ||||| || | | | | |||||| | || Sbjct 14410 TCTTCGAACTCCTCACCCCAGCACTCGAAGAGGCCGGG-CGCTTCGTTGGGACAGAAGAG 14468 Query 222010 ACTCCAGT-GCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCT 222068 ||| | || | | || || | || |||||| |||||||| | |||||| | | Sbjct 14469 CGACCAATCGCCTCCGGCCTCA-ACGCGCTTCATGAACAGGTCCGGCACCCACAGGCCGT 14527 Query 222069 GAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACT 222128 |||||||| | | || | ||||||| ||| | ||| ||| | || || | || | Sbjct 14528 AGAAGAGATCACGAGCGCGGTTCTCCTCCTTGCCATGGTTCTTCTTGAGCTCAAGGAAAT 14587 Query 222129 CAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGC 222188 | || || || |||||||||||||||||||||| || | || || |||||| | Sbjct 14588 CGAAGATATCGGCGTGCCACGGCTCCAGATAGATCGCGAACGCTCCCTTACGCTTGCCAC 14647 Query 222189 CACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGT 222248 | |||||||| || | | | ||||| ||| ||||| | || | ||||| | Sbjct 14648 CGCCCTGATCAACGTAGCGAGCGGTATCGTTGTAGACACGAAGCATGGGGATGAGTCCAT 14707 Query 222249 TGGATCGACCGTTGGTGCCCTTAATGTACG----CACCGC-CGGCCCTCAGGTTACTGGC 222303 | || ||||||||||| ||||||| | || ||| | ||| | ||| Sbjct 14708 TCGACGTTCCGTTGGTGCCGCGGATGTACGAGTTCGAAGCGCGGA--TGCGGTGAACGGC 14765 Query 222304 AGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCAT 222363 | | || || |||||||| || ||||| | ||||| |||||| ||||| Sbjct 14766 A---ACTCCAATGCCACCGGCAGACTTGGAGATGAGAGCGCACTGCTTGAGCGTGTCGTA 14822 Query 222364 GATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTT 222423 ||||||||| || ||||||||||| | | ||||| || || ||||||| ||| | Sbjct 14823 GATGCCCTCGATGGAGTCCTCCTTCATCGTGAGCAGGAAGCACGACGACAGCTGCGGACG 14882 Query 222424 GGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCT-AGACATCA 222482 | | | ||||| || || || ||| ||||||| || ||| ||| || || | | Sbjct 14883 AGGCGTGCCCGCGTTGAAGAGAGTAGGAGTGGCGTGCGTGAAG-AGCTGCTGCGAGAGGA 14941 Query 222483 GATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCA 222542 ||||||| ||||| | || || |||||||||| ||||| | |||| |||| Sbjct 14942 GATCGTATGTCTCCAGCACGGCGGGGATGTTGTCCGTGTGAAGGCCGACGGCGACCCTCA 15001 Query 222543 TGTACATGTACTGGGGCCTCTCCAC-AGGAC-CCTTGGAGCTGGAGAGCAGGTACGATTT 222600 || ||||| ||| |||| |||||| | ||| || | | || || || |||||||| Sbjct 15002 TGAGCATGTGCTGCGGCCGCTCCACGATGACTCCGTCAATCTTGA-AG-AGGTACGAGCG 15059 Query 222601 TTCCAGAGTCTTGAACCCAAAGTA 222624 ||| || |||||||| |||||||| Sbjct 15060 TTCGAGGGTCTTGAAACCAAAGTA 15083 >seq23741 Length=113318 Score = 181 bits (200), Expect = 2e-40 Identities = 426/636 (67%), Gaps = 32/636 (5%) Strand=Plus/Plus Query 25699 TTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACG 25755 || ||||| ||||| || || | ||||| || |||| | ||| ||||| ||| Sbjct 77990 TTGCAGATCGCCATTGAGAACATTCACTCGGAAATGTACTC---GCTCCTGATCGACACG 78046 Query 25756 TACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGC 25815 ||| | | |||| | |||| ||||| ||||| ||||||||||| | || Sbjct 78047 TACGTAAAGGACGCGGTGGAGAAGGATCGCCTGTTCCGTGCCATCGAGACGGTGGCCTCG 78106 Query 25816 ATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACA--GCCAGAG-CGCTACGTTT 25872 |||||| ||||||| ||||||| |||||||||| || | | | | || || ||| Sbjct 78107 GTCAAGAAGAAGGCGGAGTGGGCCCTGAAGTGGATTGCCAAGGACGGCGTCGAGACCTTT 78166 Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGC 25931 | ||||| ||||| | ||| || ||||| ||||||||||| ||| || || || ||| Sbjct 78167 GCGGAGCGTCTGGTCGGCTTCGCCGCTGTCGAGGGCATCTTCTTCTCTGGCTCCTTCTGC 78226 Query 25932 GGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCT 25991 |||||||||||||||||| || || |||||| || || ||| || |||||||| Sbjct 78227 -GCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTTGCCTTCTCGAACGAGCT 78285 Query 25992 CATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTT 26051 ||||||| | || |||||||| ||| | || ||||| ||||| ||||||| || | Sbjct 78286 CATCAGCCGCGATGAGGGTCTTCACTGCGACTTTGCTTGCCTCCTCTACA---GCATGCT 78342 Query 26052 GCTCCACAAAC---CTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGAT 26108 || |||| | | || | | | || ||| |||||| ||||| || ||||| Sbjct 78343 CGTCAACAAGCCGACCTCGGACGTGCCC--AAGCAG-ATCATCCTGGAGGCCGTCGAGAT 78399 Query 26109 CGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACT 26168 ||||||||||| | ||||||||| || || Sbjct 78400 TGAGAAGGAGTTCGTCACTGAGTCGCTCCCCGTCGCGCTCATCGGCATGAACGCCAACCT 78459 Query 26169 CATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GT-GC---CAGCTGGGACTC 26223 |||| |||| ||||| |||| ||| ||||| | |||||| || || | |||| || Sbjct 78460 CATGTGCCAGTACATCGAGTTTGTCGCCGATCGTCTGCTCGTCGCTCTCGGCTGCGAGAA 78519 Query 26224 GCCAGAC-TCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGG 26282 || || || |||||| | ||||||||| || ||||| ||| ||| | || || Sbjct 78520 GC---ACTTCAACAGTA---CCAACCCGTTCCCCTGGATGGAGCTCATCTCGCTTGAGGG 78573 Query 26283 GAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTA 26318 |||||||||||||| || |||| ||||| || Sbjct 78574 CAAGACCAACTTCTTCGAGCGCCGGGTGGGCGAGTA 78609 Score = 95.1 bits (104), Expect = 2e-14 Identities = 156/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 |||||||||||||||||||| | ||| |||||||||||| || | ||||| | | Sbjct 77682 TGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAAGTCGATCTAGGC 77741 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTG 25599 |||||| || |||| | | || || | ||||||| || || ||||| |||| Sbjct 77742 CCCGACATGAACCACTGGGTCTCCCTCACCGACGACGAGCGCCACTTCATCAAGCACGTC 77801 Query 25600 TTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACC 25659 | || ||||| || ||| || ||||| ||| ||||| ||| || | | |||| Sbjct 77802 CTCGCCTTCTTCGCCGCCAGCGACGGTATCGTGGCTGAGAACCTGGCCGGGCGCTTCATG 77861 Query 25660 AGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAG 25704 | |||||| ||| | || || || ||||||||||||||| Sbjct 77862 AAGGAAGTCCAGATCCCCGAAGCTCGTTGCTTCTACGGTTTCCAG 77906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928565008725120