Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq19361 199 5e-46 seq23003 161 1e-34 seq23741 107 2e-18 >seq19361 Length=29087 Score = 199 bits (220), Expect = 5e-46 Identities = 622/942 (66%), Gaps = 21/942 (2%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TA--TCTTCAACGGCTCGATGGCATCCTC 75202 ||||||||| |||| ||||| || | | | || ||||||| | | || || || || Sbjct 15083 TACTTTGGTTTCAAGACCCTCGA-ACGCTCGTACCTCTTCAA--GATTGACGGAGTCATC 15027 Query 75203 ATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATT 75262 |||| || ||| ||||| ||||| ||||||| ||||| | ||| ||| |||| Sbjct 15026 GTGGAGCGGCCGCAGCACATGCTCATGAGGGTCGCCGTCGGCCTTCACACGGACAACATC 14967 Query 75263 GATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCA 75322 | || ||||||||||||| | || || | |||| ||||| || || Sbjct 14966 CCCGCCGTGCTGGAGACATACGATCTCCTCTCGCAGCAGCTCTTCACGCACGCCACTCCT 14907 Query 75323 ACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAAC 75382 || |||||||| || || || || | |||||| |||| |||||||| || | | Sbjct 14906 ACTCTCTTCAACGCGGGCACGCCTCGTCCGCAGCTGTCGTCGTGCTTCCTGCTCACGATG 14847 Query 75383 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 75442 ||||||||||| ||| | || ||||| | || || | | |||| || | ||||| ||| Sbjct 14846 AAGGAGGACTCCATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCTCTCATCTCCAAG 14787 Query 75443 TGGGCTGGGGGTATTGG-GATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA--TT 75499 | || || || ||||| | ||| | | || | | || || |||||| | Sbjct 14786 TCTGCCGGTGGCATTGGAGTTGC-CGTTCACCGCATCCGCGCTTCGAA--CTCGTACATC 14730 Query 75500 CGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACA 75559 || || || || || || |||| | || || |||||||| || | |||| || Sbjct 14729 CGCGGCACCAACGGAACGTCGAATGGACTCATCCCCATGCTTCGTGTCTACAACGATACC 14670 Query 75560 GCGCGCTATGTAAATCAAG-CGG-GGCGT-CGCAAGGGGTCCATCGCGGTCTACTTGGAA 75616 || ||||| || |||| | ||| ||| || ||||| | ||||| |||| |||| Sbjct 14669 GCTCGCTACGTTGATCAGGGCGGTGGCAAGCGTAAGGGAGCGTTCGCGATCTATCTGGAG 14610 Query 75617 CCATGGCATGCCGATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGGTGACGAAGA 75675 || ||||| ||||||||| | || ||||||||| | | || ||||| || | || || Sbjct 14609 CCGTGGCACGCCGATATCTTCGATTTCCTTGAGCTCAAGAAG-AACCATGGCAAGGAGGA 14551 Query 75676 GGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGT 75735 | || | | |||||||| | ||||||| | || ||||| ||||||||||| || Sbjct 14550 GAACCGCGCTCGTGATCTCTTCTACGGCCTGTGGGTGCCGGACCTGTTCATGAAGCGCGT 14491 Query 75736 TGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-G 75794 ||||| || || | ||||| || |||||||| || | || || || |||| ||| | Sbjct 14490 TGAGGCCGGAGGCGATTGGTCGCTCTTCTGTCCCAACGAAGCGCCCGGCCTCTTCGAGTG 14431 Query 75795 CGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC-CAAT 75853 | | |||||||||||| |||| ||| || || | ||||| | || | Sbjct 14430 CTG-GGGTGAGGAGTTCGAAGAGAAGTACGTGCGCTACGAGAATGAGGGACGCGCTCGCC 14372 Query 75854 GCGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGA 75913 ||| | || ||| || | ||| | |||||| ||||||||| ||||| || Sbjct 14371 GCGTC-GTCAAGGCCCAGGAGCTGTGGTTCTCCATTCTCGAATCACAGATCGAGACCGGC 14313 Query 75914 ACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGA 75973 || || || || ||||||||||| | || || ||| ||||| || | | || Sbjct 14312 ACGCCTTACATCCTTTACAAGGACTCGTGCAATGCCAAGTCGAACCAGCAGCACCTCGGC 14253 Query 75974 ACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACG 76033 || ||| || ||| || | |||||||| | | ||| ||| | |||||| Sbjct 14252 ACCATCCAGTCCTCGAACTTGTGCACGGAGGTCATTCAGTTCACGTCTCCTGATGAGGTC 14193 Query 76034 GCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTC 76075 || || ||||| | || || |||| ||||| ||||| ||| Sbjct 14192 GCAGTGTGCAACCTCGCGTCGCTCGCTCTTCCGAAGTACGTC 14151 >seq23003 Length=12893 Score = 161 bits (178), Expect = 1e-34 Identities = 452/677 (67%), Gaps = 15/677 (2%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TA--TCTTCAACGGCTCGATGGCATCCTC 75202 ||||||||| |||| ||||| || | | | || ||||||| | |||| || || || Sbjct 590 TACTTTGGTTTCAAGACCCTCGA-ACGCTCGTACCTCTTCAA--GATCGACGGAGTCATC 646 Query 75203 ATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATT 75262 |||| || ||| ||||| ||||| ||||||| | ||| | ||| ||| |||| Sbjct 647 GTGGAGCGGCCGCAGCACATGCTCATGAGGGTCGCCGTGGGCCTTCACAAGGACAACATC 706 Query 75263 GATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCA 75322 | || ||||||| || ||| | || || | |||| ||||| || || Sbjct 707 CCCGCCGTGCTGGAGACCTATGACCTCCTTTCTCAGCAGCTCTTCACGCACGCCACTCCT 766 Query 75323 ACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAAC 75382 || |||||||| || || || || | |||||| | || |||||||| || | | Sbjct 767 ACTCTCTTCAACGCGGGCACGCCTCGTCCGCAGCTCTCGTCGTGCTTCCTGCTCACGATG 826 Query 75383 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 75442 ||||||||||| ||| | || ||||| | || || | | |||| || | ||||| ||| Sbjct 827 AAGGAGGACTCCATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCTCTCATCTCCAAG 886 Query 75443 TGGGCTGGGGGTATTGG-GATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCG 75501 | || || || ||||| | ||| | |||| | | || || || || || Sbjct 887 TCCGCAGGTGGCATTGGTGTTGC-CGTCCACCGCATCCGCGCTTCGAACTCCTACATCCG 945 Query 75502 GGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 75561 || || || || ||| | || | || || ||||| || || | |||| || || Sbjct 946 CGGCACCAACGGAACATCCAACGGACTCATCCCCATGCTCCGTGTTTACAACGATACCGC 1005 Query 75562 GCGCTATGTAAATCAAG-CGG-GGCGT-CGCAAGGGGTCCATCGCGGTCTACTTGGAACC 75618 ||||| || |||| | ||| ||| |||||||| | ||||| |||| |||| || Sbjct 1006 TCGCTACGTTGATCAGGGCGGTGGCAAGCGCAAGGGAGCGTTCGCGATCTATCTGGAGCC 1065 Query 75619 ATGGCATGCCGATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGGTGACGAAGAGG 75677 ||||| ||||| ||| | || ||||||||| | | || ||||| || | || ||| Sbjct 1066 GTGGCACGCCGACATCTTCGATTTCCTTGAGCTCAAGAAG-AACCATGGCAAGGAGGAGA 1124 Query 75678 CTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTG 75737 || | | |||||||| | ||||||| | || ||||| ||||||||||| || | Sbjct 1125 ACCGTGCTCGTGATCTCTTCTATGGCCTGTGGGTGCCCGACCTGTTCATGAAGCGCGTCG 1184 Query 75738 AGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGA-CGCG 75796 ||| || || | ||||| || ||||| || || | || ||||| |||| ||| || Sbjct 1185 AGGCCGGAGGCGACTGGTCGCTCTTCTGCCCCAACGAAGCGCCAGGCCTCTTCGAGTGCT 1244 Query 75797 GTGGGTGAGGAGTTTGA 75813 | ||| || ||||| || Sbjct 1245 G-GGGCGACGAGTTCGA 1260 >seq23741 Length=113318 Score = 107 bits (118), Expect = 2e-18 Identities = 267/396 (67%), Gaps = 17/396 (4%) Strand=Plus/Plus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAA--GTCTCGCT-CCTTCGCCG 65077 ||||||||||| | ||||| |||| ||| ||| || | | ||| |||| || | Sbjct 78111 AGAAGAAGGCGGAGTGGGCCCTGAAGTGGATTGCCAAGGACGGCGTCGAGACCTTTGCGG 78170 Query 65078 AGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTA 65137 |||| || | | || || ||| ||||| ||||||||||| || || |||||||| | Sbjct 78171 AGCGTCTGGTCGGCTTCGCCGCTGTCGAGGGCATCTTCTTCTCTGGCTCCTTCTGCGCCA 78230 Query 65138 TTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTT 65197 | | ||| | |||||||| || |||||||| || || |||||| || || || || Sbjct 78231 TCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTTGCCTTCTCGAACGAGCTCATCA 78290 Query 65198 CCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTG--CGT-A 65254 ||| ||||||||||| ||| || |||| | || ||| || | | || ||| | Sbjct 78291 GCCGCGATGAGGGTCTTCACTGCGACTTTG-CTTG--CCTCCTCTACAGCATGCTCGTCA 78347 Query 65255 ATAGACCCACTACCGAAACTATCCACGC----CATCGTGAAAGAGGCGGTTGAGATTGAG 65310 | | || || || | | ||| || |||| || ||||| || ||||||||| Sbjct 78348 ACAAGCCGAC-CTCGGACGTGCCCAAGCAGATCATCCTG---GAGGCCGTCGAGATTGAG 78403 Query 65311 AAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATG 65370 || | |||| || || | ||||| |||||||| |||||| | | ||| Sbjct 78404 AAGGAGTTCGTCACTGAGTCGCTCCCCGTCGCGCTCATCGGCATGAACGCCAACCTCATG 78463 Query 65371 TCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTC 65406 | | ||||||| |||| ||| | |||||||| ||| Sbjct 78464 TGCCAGTACATCGAGTTTGTCGCCGATCGTCTGCTC 78499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596389898322240