Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq21502 122 3e-22 seq19361 116 1e-20 seq23059 84.2 6e-11 seq22582 84.2 6e-11 seq20406 84.2 6e-11 >seq21502 Length=49805 Score = 122 bits (134), Expect = 3e-22 Identities = 169/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 251425 CACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGC-GAGA 251483 ||||| || || | ||| |||||||| ||| | ||||| | ||| ||| | | | Sbjct 19727 CACACGTGCACTCGGTAGGCATCAGACTGGTCGAAGAGCCG-CTCTTTAAGAAACTGGGC 19669 Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 || ||||| || ||||||||||| || |||||||||||||| || |||||||| || || Sbjct 19668 AGCTCCGTGAGAGATCATACAATCGCGTTCCATTTCACCGAATCGGAGACCACCGTCTCG 19609 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603 | ||| |||||| | ||||| | |||||| | || ||| || ||| ||| || Sbjct 19608 GGACCTGCCCTCGACTGGCTGCCTAGTGAGGATCTGCACAGGGCCCCTGGCGCGAGAGTG 19549 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAA 251657 ||| |||| ||||||||||| || | ||| ||| | | ||||||||||| Sbjct 19548 GATCTTGTCATCGACCATATGCTTCAGCCTCTGATAGTACGTTGGACCGATGAA 19495 Score = 96.9 bits (106), Expect = 1e-14 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 ||| ||||||||||||| ||||| ||||| ||||| | ||||||||| || | | Sbjct 19184 TGGCCGATAGTCATACGTGACGGAATCGCATGAGGATTCACGATGATGTCAGGGGTGATG 19125 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTTG 251957 || ||| || ||||||||||||| || | | ||| ||| | || | || |||||||| Sbjct 19124 CCCTCAATCGTAAAGGGCATATCCTCTTGC-CTATACATGATGCCCACGGTACCCTTTTG 19066 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 || || || || ||||||||||| ||||| Sbjct 19065 CCCATGGCGCGAGCTGAACTTATCTCCAAT 19036 Score = 84.2 bits (92), Expect = 6e-11 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 233272 AGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATT 233331 ||| ||||||| ||||||||||| |||||||||||||| | || |||||||| || Sbjct 19668 AGCTCCGTGAGAGATCATACAATCGCGTTCCATTTCACCGAATCGGAGACCACCGTCTCG 19609 Query 233332 TGACCTACCCTGGACTGTTTGACGAGTTA-AAACAGTTCTTGGACCCTGAGCACGATAAT 233390 ||||| |||| ||||| || | ||| | | | | | || ||||| || ||| | | Sbjct 19608 GGACCTGCCCTCGACTGGCTGCCTAGTGAGGATCTGCACAGGGCCCCTG-GCGCGAGAGT 19550 Query 233391 TAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATA 233430 || || || | |||||||||||||| ||| ||| || Sbjct 19549 GGATCTTGTCATCGACCATATGCTTCAGCCTCTGATAGTA 19510 >seq19361 Length=29087 Score = 116 bits (128), Expect = 1e-20 Identities = 353/537 (66%), Gaps = 9/537 (2%) Strand=Plus/Plus Query 155969 CTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGG 156028 |||||| | ||| || |||||| ||||| | ||| || ||||| | || || Sbjct 14550 CTCCTCCTTGCCATGGTTCTTCTTGAGCTCAAGGAAATCGAAGATATCGGCGTGCCACGG 14609 Query 156029 CTCCAGATACATAGCAAAACTACCATTCCTCTTGCCA---CCCTGATCTACATACCGAGC 156085 ||||||||| || || || || || | ||||||| |||||||| || || ||||| Sbjct 14610 CTCCAGATAGATCGCGAACGCTCCCTTACGCTTGCCACCGCCCTGATCAACGTAGCGAGC 14669 Query 156086 AGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCG 156145 || | ||| |||||| ||||| || || | ||||| || || || ||||| ||||| Sbjct 14670 GGTATCGTTGTAGACACGAAGCATGGGGATGAGTCCATTCGACGTTCCGTTGGTGCCGCG 14729 Query 156146 AATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTT 156205 || | ||| || | ||| | |||| | |||||| ||||| | | || Sbjct 14730 GATGTACGAGTTCGAAGCGCGGATGCGGTGAACGGCAACTCCAATGCCACCGGCAGACTT 14789 Query 156206 AGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 || || ||||||| | ||| | || | | | || || || || || || || | ||| Sbjct 14790 GGAGATGAGAGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATGGAGTCCTCCTTCAT 14849 Query 156266 TGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGG 156325 | || || ||||||| | || || || || || || |||||||| || ||||| Sbjct 14850 CGTGAGCAGGAAGCACGACGACAGCTGCGGACGAGGCGTGCCCGCGTTGAAGAGAGTAGG 14909 Query 156326 TGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAG 156385 || || || | || || | || | ||||||||||||| | | | | Sbjct 14910 AGTGGCGTGCGTGAAGAGCTGCTGCGAGAGGAGATCGTATGTCTCCAGCA-CGGC-GGGG 14967 Query 156386 AT-TAGACC-CGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACA 156443 || | | || ||||| | || | ||||||||| ||| ||||| || ||||| || Sbjct 14968 ATGTTGTCCGTGTGAAGGCCGACGGCGACCCTCATGAGCATGTGCTGCGGCCGCTCCACG 15027 Query 156444 ATCACTCCATCAAT-TCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 || ||||| ||||| | | || ||||| | |||||| || || || || || || || Sbjct 15028 ATGACTCCGTCAATCTTGAAG-AGGTACGAGCGTTCGAGGGTCTTGAAACCAAAGTA 15083 >seq23059 Length=6949 Score = 84.2 bits (92), Expect = 6e-11 Identities = 125/173 (72%), Gaps = 6/173 (3%) Strand=Plus/Plus Query 302596 CGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCA 302655 ||||| ||||| || || || || || || || ||||| || ||||| |||||||| Sbjct 1377 CGCTGGATATATCCTGTCTCAGCAGTCTTCACCGCAGTATCGATAAGACCCTCACGACCA 1436 Query 302656 CCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAAC 302714 ||||| || |||||||| | ||| | ||| ||| || || | | | ||| |||| || Sbjct 1437 CCCATGGCGTGGAAGAAGAACTCCTGCGG-CGTCAGACCTCGTAGGTACGAGTTCTCGAC 1495 Query 302715 GAAACCACGCGCCTCGGG--CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGT 302765 ||| ||||| | ||| || |||| ||| | ||||| ||||| ||||| || Sbjct 1496 GAAGCCACGTGACTCAGGACCGAA--ATCGTATTTGGTGAAGTGGGGCAGTGT 1546 >seq22582 Length=41796 Score = 84.2 bits (92), Expect = 6e-11 Identities = 125/173 (72%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 302596 CGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCA 302655 ||||| ||||| || || || || || || || ||||| || ||||| |||||||| Sbjct 5573 CGCTGGATATATCCTGTCTCAGCAGTCTTCACCGCAGTATCGATAAGACCCTCACGACCA 5514 Query 302656 CCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAAC 302714 ||||| || |||||||| | ||| | ||| ||| || || | | | ||| |||| || Sbjct 5513 CCCATGGCGTGGAAGAAGAACTCCTGCGG-CGTCAGACCTCGTAGGTACGAGTTCTCGAC 5455 Query 302715 GAAACCACGCGCCTCGGG--CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGT 302765 ||| ||||| | ||| || |||| ||| | ||||| ||||| ||||| || Sbjct 5454 GAAGCCACGTGACTCAGGACCGAA--ATCGTATTTGGTGAAGTGGGGCAGTGT 5404 >seq20406 Length=11508 Score = 84.2 bits (92), Expect = 6e-11 Identities = 125/173 (72%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 302596 CGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCA 302655 ||||| ||||| || || || || || || || ||||| || ||||| |||||||| Sbjct 11436 CGCTGGATATATCCTGTCTCAGCAGTCTTCACCGCAGTATCGATAAGACCCTCACGACCA 11377 Query 302656 CCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAAC 302714 ||||| || |||||||| | ||| | ||| ||| || || | | | ||| |||| || Sbjct 11376 CCCATGGCGTGGAAGAAGAACTCCTGCGG-CGTCAGACCTCGTAGGTACGAGTTCTCGAC 11318 Query 302715 GAAACCACGCGCCTCGGG--CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGT 302765 ||| ||||| | ||| || |||| ||| | ||||| ||||| ||||| || Sbjct 11317 GAAGCCACGTGACTCAGGACCGAA--ATCGTATTTGGTGAAGTGGGGCAGTGT 11267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471363168037026