Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq23925 107 2e-18 seq23068 107 2e-18 seq24030 89.7 4e-13 seq22211 86.0 5e-12 >seq23925 Length=43003 Score = 107 bits (118), Expect = 2e-18 Identities = 108/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 107176 GCACGGCTTCCACGTGCACGAATTTGGCGACACCAGCAACGGCTGTACGTCCGCCGGTGA 107235 ||||||||||||||| ||||| ||||| |||| || ||| || || | |||||||| Sbjct 10261 GCACGGCTTCCACGTCCACGAGTTTGGGGACAACACCAATGGGTGCGTGAGCGCCGGTGC 10202 Query 107236 ACACTTCAATCCCACATACCAA-AATCACGGTGCGCCCGACGCCGTAGAAAGGCACGTCG 107294 ||||||||||| || ||| || ||||| | ||| |||| || ||| | ||||||| Sbjct 10201 GCACTTCAATCCT-CACGGCAAGAAGCACGGCGGGCCTGACGACGACGAACGTCACGTCG 10143 Query 107295 GCGATCTGGGCAACGTCC 107312 |||| ||||||||||||| Sbjct 10142 GCGACCTGGGCAACGTCC 10125 >seq23068 Length=17433 Score = 107 bits (118), Expect = 2e-18 Identities = 117/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 107167 GCACGGACTGCACGGCTTCCACGTGCACGAATTTGGCGACACCAGCAACGGCTGTACGTC 107226 || ||| | ||||||||||||||| ||||| ||||| |||| || |||||| || | Sbjct 17227 GCCCGGCCAGCACGGCTTCCACGTCCACGAGTTTGGGGACAACACCAACGGGTGCGTGAG 17286 Query 107227 CGCCGGTGAACACTTCAATCCCACATACCAA-AATCACGGTGCGCCCGACGCCGTAGAAA 107285 |||||||| ||||| |||||| || ||| || ||||| | || |||| || || Sbjct 17287 CGCCGGTGCGCACTTTAATCCC-CACGGCAAGAAGCACGGCGGCCCTGACGACGACGAGC 17345 Query 107286 GGCACGTCGGCGATCTGGGCAACGTCCGCTCCG 107318 | ||||||||||| ||||||||||||| | ||| Sbjct 17346 GTCACGTCGGCGACCTGGGCAACGTCCTCGCCG 17378 >seq24030 Length=66970 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || || || ||||| || || ||| ||||| ||| || | Sbjct 66190 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACGATCACCCTCGAAGTCGAGTCTAGC 66131 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | || || |||||||| ||||| || || | ||| || || Sbjct 66130 GATACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCAG 66071 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | ||||| | || || || ||||| ||||| | | | || |||| || |||||| Sbjct 66070 CAGCGCCTTATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGGCTGACTACAAC 66011 Query 110453 ATTCAAAAAGAATCTAC 110469 |||||||| || ||||| Sbjct 66010 ATTCAAAAGGAGTCTAC 65994 >seq22211 Length=15201 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| ||||| ||||| || |||||||| ||||| ||| | | Sbjct 4203 ATGCAGATCTTCGTCAAGACTTTGACCGGTAAGACCATTACTCTCGAAGTCGAGTCGAGC 4262 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | || || ||||||||| ||||| || || | || || || Sbjct 4263 GATACCATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAG 4322 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | || || || ||||| ||||| | | || |||| || |||||| Sbjct 4323 CAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACGCTGGCCGACTACAAC 4382 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| || || || | ||| | ||| | | ||||| || || Sbjct 4383 ATTCAAAAGGAGTCAACCCTCCACCTCGTGCTCCGCCTGCGTGGAGG 4429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412720350744314