Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq24030 107 2e-18 seq23925 107 2e-18 seq23068 107 2e-18 seq23826 100 2e-16 seq22955 95.1 1e-14 seq22211 95.1 1e-14 seq23480 91.5 1e-13 seq18730 91.5 1e-13 seq18924 89.7 4e-13 >seq24030 Length=66970 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || || || ||||| || || ||| ||||| ||| || || Sbjct 66190 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACGATCACCCTCGAAGTCGAGTCTAGC 66131 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || || || ||||| || || || || | ||| || ||| Sbjct 66130 GATACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCAG 66071 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | ||||| | || || || ||||| ||||||| | || |||| ||||||||| Sbjct 66070 CAGCGCCTTATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGGCTGACTACAAC 66011 Query 107736 ATTCAAAAGGAGTCTAC 107752 ||||||||||||||||| Sbjct 66010 ATTCAAAAGGAGTCTAC 65994 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || || || ||||| ||||||||| |||| ||| || || Sbjct 66646 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATTACCCTCGAGGTCGAGTCTAGC 66587 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || || || ||||| || || || || | ||| || ||| Sbjct 66586 GATACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCAG 66527 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || ||||| ||||| ||||||| || |||| ||||||||| Sbjct 66526 CAGCGCCTCATCTTCGCTGGTAAGCAGCTTGAGGACGGTCGTACCCTGGCCGACTACAAC 66467 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || ||||||||||| Sbjct 66466 ATCCAGAAGGAGTCTAC 66450 >seq23925 Length=43003 Score = 107 bits (118), Expect = 2e-18 Identities = 108/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 105086 GCACGGCTTTCACGTTCACGAGTTCGGCGATACCAGCAACGGCTGCACGTCCGCCGGCGA 105145 ||||||||| ||||| |||||||| || || | || ||| || ||| | |||||| | Sbjct 10261 GCACGGCTTCCACGTCCACGAGTTTGGGGACAACACCAATGGGTGCGTGAGCGCCGGTGC 10202 Query 105146 GCACTTCAACCCTACGCGCCAA-AATCACGGCGCTCCAGACGCCGCAGAAAGGCACGTCG 105204 ||||||||| ||| | || ||| || ||||||| || |||| || ||| | ||||||| Sbjct 10201 GCACTTCAATCCT-CACGGCAAGAAGCACGGCGGGCCTGACGACGACGAACGTCACGTCG 10143 Query 105205 GCGACCTGGGCAATGTCC 105222 ||||||||||||| |||| Sbjct 10142 GCGACCTGGGCAACGTCC 10125 >seq23068 Length=17433 Score = 107 bits (118), Expect = 2e-18 Identities = 117/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 105077 GCGCGGACTGCACGGCTTTCACGTTCACGAGTTCGGCGATACCAGCAACGGCTGCACGTC 105136 || ||| | ||||||||| ||||| |||||||| || || | || |||||| ||| | Sbjct 17227 GCCCGGCCAGCACGGCTTCCACGTCCACGAGTTTGGGGACAACACCAACGGGTGCGTGAG 17286 Query 105137 CGCCGGCGAGCACTTCAA-CCCTACGCGCCAAAATCACGGCGCTCCAGACGCCGCAGAAA 105195 |||||| | |||||| || ||| ||| || | || ||||||| || |||| || || Sbjct 17287 CGCCGGTGCGCACTTTAATCCCCACG-GCAAGAAGCACGGCGGCCCTGACGACGACGAGC 17345 Query 105196 GGCACGTCGGCGACCTGGGCAATGTCCGCTCCG 105228 | |||||||||||||||||||| |||| | ||| Sbjct 17346 GTCACGTCGGCGACCTGGGCAACGTCCTCGCCG 17378 >seq23826 Length=10614 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| ||||| || || || |||||||| ||||| ||| | || Sbjct 8521 ATGCAGATCTTCGTCAAGACTTTGACTGGTAAGACCATTACTCTCGAAGTCGAGTCGAGC 8580 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || || || ||||| || || || ||| | ||| || ||| Sbjct 8581 GATACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 8640 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | |||||||| ||||| ||||||| | || | || ||||||||| Sbjct 8641 CAGCGCCTCATCTTCGCGGGTAAGCAGCTTGAGGACGGCCGTACCCTTGCCGACTACAAC 8700 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| | ||| Sbjct 8701 ATCCAGAAGGAGTCGACCCTCCACCTCGTG 8730 >seq22955 Length=9686 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| ||||| || || || |||||||| ||||| ||| | || Sbjct 8380 ATGCAGATCTTCGTCAAGACTTTGACCGGTAAGACCATTACTCTCGAAGTCGAGTCGAGC 8321 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || || || ||||| || || || || | ||| || ||| Sbjct 8320 GATACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAG 8261 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | ||||| | || ||||| ||||| ||||||| || | || ||||||||| Sbjct 8260 CAGCGCCTTATCTTCGCCGGTAAGCAGCTTGAGGACGGTCGTACGCTTGCCGACTACAAC 8201 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || ||||||||||| || | ||| | ||| Sbjct 8200 ATCCAAAAGGAGTCAACCCTCCACCTCGTG 8171 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || || || || || ||| ||||| ||| | || Sbjct 8152 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACGATCACCCTCGAAGTCGAGTCGAGC 8093 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || || || ||||| || || || ||| | ||| || ||| Sbjct 8092 GATACCATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 8033 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || ||||| ||||| ||||||| | || |||| ||||||||| Sbjct 8032 CAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGTACCCTGGCCGACTACAAC 7973 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| | ||| Sbjct 7972 ATCCAGAAGGAGTCGACCCTCCACCTCGTG 7943 >seq22211 Length=15201 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| ||||| || || || |||||||| ||||| ||| | || Sbjct 4203 ATGCAGATCTTCGTCAAGACTTTGACCGGTAAGACCATTACTCTCGAAGTCGAGTCGAGC 4262 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || || || |||||| || || || || | || || ||| Sbjct 4263 GATACCATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAG 4322 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||||| || |||| ||||||||| Sbjct 4323 CAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACGCTGGCCGACTACAAC 4382 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||||||||||| || | ||| | ||| Sbjct 4383 ATTCAAAAGGAGTCAACCCTCCACCTCGTG 4412 >seq23480 Length=26370 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || || || ||||| ||| ||||| ||| | || Sbjct 12780 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAAGTCGAGTCGAGC 12721 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || || || ||||| || || || ||| | ||| || ||| Sbjct 12720 GATACCATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 12661 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | ||||| | || ||||| ||||| ||||||| | || | || ||||||||| Sbjct 12660 CAGCGTCTTATCTTCGCCGGTAAGCAGCTTGAGGACGGCCGCACTCTCGCCGACTACAAC 12601 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| | ||| Sbjct 12600 ATCCAGAAGGAGTCGACCCTCCACCTCGTG 12571 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GC 107611 || ||||| || || || || || | || ||||| ||||| ||| |||| ||| || Sbjct 13465 AACATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGAGC 13406 Query 107612 TGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGA 107671 | | ||||| ||| | || || |||||||| || || || || | ||| || Sbjct 13405 TCG-GATACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGTATTCCCCCCGA 13347 Query 107672 TCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTA 107731 ||||||| | ||||| | |||||||| ||||| ||||||| | || | || ||||| Sbjct 13346 TCAGCAGCGTCTTATCTTCGCGGGTAAGCAGCTCGAGGACGGCCGCACTCTTGCCGACTA 13287 Query 107732 CAACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||| || |||||||| || | ||| | ||| Sbjct 13286 CAACATCCAGAAGGAGTCGACTCTCCACCTCGTG 13253 >seq18730 Length=7279 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| |||||||| ||||| ||| | || Sbjct 124 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATTACGCTCGAAGTCGAGTCGAGC 183 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || || |||||||| || || || || | ||| || ||| Sbjct 184 GATACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCAG 243 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || ||||| ||||| ||||||| | || | || ||||||||| Sbjct 244 CAGCGCCTCATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTCGCTGACTACAAC 303 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| | ||| Sbjct 304 ATCCAGAAGGAGTCGACTCTCCACCTCGTG 333 >seq18924 Length=24070 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || || || |||||||| ||||| ||| | || Sbjct 17986 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATTACGCTCGAAGTCGAGTCGAGC 17927 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || || |||||||| || || || || | ||| || ||| Sbjct 17926 GATACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCAG 17867 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || ||||| ||||| ||||||| | || |||| ||||||||| Sbjct 17866 CAGCGCCTCATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGTACCCTGGCCGACTACAAC 17807 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || |||||||| || Sbjct 17806 ATCCAGAAGGAGTCGAC 17790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398759652127522