Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq22901 113 3e-20 seq19772 98.7 8e-16 seq24030 95.1 9e-15 seq23826 95.1 9e-15 seq21554 91.5 1e-13 seq23603 86.0 5e-12 seq23480 86.0 5e-12 seq18924 82.4 6e-11 >seq22901 Length=26441 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | || || |||||||| ||||| |||||||| || ||||||||||| || || Sbjct 2980 CCTCCGCGCAGGCGTAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTATACTCGGCG 2921 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || || || || |||||||||||| | ||||| | |||||||| || ||| Sbjct 2920 AGCGTACGGCCGTCCTCCAGCTGTTTGCCAGCAAAGATCAAGCGCTGCTGATCGGGAGGA 2861 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | || ||||||| ||| | || || ||| | || Sbjct 2860 ATTCCTTCCTTGTCCTGCAGCTTAGCCTTGACAGCTTCAATGGTATCGGAAGGACTCACA 2801 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | |||| | |||||||| | ||| || | || |||||||| Sbjct 2800 TCCACGGTTACGGACTTGCCAGTGAGGGTCTTGATGAAGATCTGCAT 2754 >seq19772 Length=5961 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || |||||| || | || || || ||||| ||||||||||| || || || Sbjct 1324 CCACCACGCAGACGCAGTACGAGGTGGAGGGTTGATTCCTTTTGAATGTTGTAGTCGGCC 1383 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || ||||| || |||||||| | || | | ||||| || || || Sbjct 1384 AGGGTGCGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGAGGG 1443 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || || || || |||| | ||||| || ||| Sbjct 1444 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTTTCGATCGTGTCGCTCGACTCGACT 1503 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || || || || ||||| || || || |||||||| Sbjct 1504 TCGAGAGTAATGGTCTTACCCGTCAAGGTCTTGACGAAGATCTGCAT 1550 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||| | || || || || || || || ||||| || || || | |||||| Sbjct 1792 CGAAGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCG 1851 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || ||||| | || | | ||||| || || ||||||||||| ||| Sbjct 1852 TCCTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGGGGAATACCCTCCTTG 1911 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||||| || || | || | |||||||| || || ||||| || || Sbjct 1912 TCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTCAGAGGACTCGACCTCAAGGGTGATG 1971 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | ||| || || || |||||||| Sbjct 1972 GTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 2006 >seq24030 Length=66970 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | || || ||||| | || || || || || || || ||||| || || || Sbjct 66192 CCTCCGCGCAGGCGAAGCACGAGGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCG 66251 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || ||||| || |||||||| | || | | ||||| || || ||| Sbjct 66252 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGGGGA 66311 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| ||||| || | || || || || |||| | |||||||| || || Sbjct 66312 ATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTTTCGATCGTGTCAGAGGACTCGACC 66371 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || | ||| || || || |||||||| Sbjct 66372 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 66418 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | || || || || || ||||||||||| || || || | |||||| Sbjct 65975 ACGAAGGACGAGGTGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGCCAGGGTGCGGCC 66034 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || || |||||||| | || | | ||||| || || ||||||||||| || Sbjct 66035 GTCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTT 66094 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || || || || | || | || || | || ||||| || || || Sbjct 66095 GTCCTGGATCTTCTGCTTCACGTTCTCGATCGTATCGCTAGACTCGACTTCGAGGGTGAT 66154 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| ||||| || || || |||||||| Sbjct 66155 CGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 66190 >seq23826 Length=10614 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| ||||| | || || || || || || || ||||| || || ||| Sbjct 8519 CCGCCACGCAGACGAAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCA 8460 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || ||||| || || || || | || | | |||||||| || ||| Sbjct 8459 AGAGTGCGGCCGTCCTCGAGCTGCTTACCCGCGAAGATAAGACGCTGCTGATCGGGGGGA 8400 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| ||||| || | ||||| || || |||| | ||||| || || || Sbjct 8399 ATACCCTCCTTGTCCTGGATCTTTTGCTTCACGTTTTCGATGGTGTCCGAGGACTCGACC 8340 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || ||||| || | ||| || || || |||||||| || Sbjct 8339 TCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATATT 8290 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||| | || || ||||| || || || ||||| || || |||| ||| || Sbjct 8963 CGGAGCACAAGGTGGAGAGTGGACTCCTTCTGTATGTTGTAGTCGGCAAGGGTACGGCCG 8904 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || || || || | || | | ||||| || || ||||||||||| ||| Sbjct 8903 TCCTCGAGCTGCTTACCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTG 8844 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||||| || || | || | |||||| || || || || || || || Sbjct 8843 TCCTGGATCTTTTGCTTCACGTTCTCAATAGTGTCCGAGGACTCGACCTCGAGGGTGATC 8784 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | ||| || || || |||||||| Sbjct 8783 GTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 8749 >seq21554 Length=44846 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || |||||||| || || ||||| || || ||||||||||| || | | || || | Sbjct 20463 CGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATACTCGCCGAGCGTACGGCTA 20404 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || |||||||| | ||||| | |||||||| || ||||| || || ||| Sbjct 20403 TCCTCCAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCGGGGGGAATTCCTTCCTTG 20344 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || || |||| ||| | || || ||| | || || | ||| | Sbjct 20343 TCTTGCAGCTTAGCCTTTACAGCTTCAATGGTATCGGAAGGACTCACATCCACAGTGACG 20284 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | |||||||| | ||| || | || |||||||| Sbjct 20283 CTCTTGCCAGTGAGGGTCTTGATGAAGATCTGCAT 20249 >seq23603 Length=18425 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||| | || || || || || || || ||||| || || || | |||||| Sbjct 40 CGAAGCACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCG 99 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || ||||| | || | | ||||| || || ||||||||||| ||| Sbjct 100 TCCTCAAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCGGGAGGAATACCCTCCTTG 159 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||||| || || | || | |||||||| || || || ||||| || Sbjct 160 TCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTCAGAGGACTCGACCTCGAGAGTAATG 219 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | ||| || || || |||||||| Sbjct 220 GTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 254 >seq23480 Length=26370 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | || || ||||| | || || || || || || || ||||| || || ||| Sbjct 13236 CCTCCACGCAGGCGAAGCACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCA 13295 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || ||||| || || || || | || | | |||||||| || ||| Sbjct 13296 AGAGTGCGGCCGTCCTCGAGCTGCTTACCCGCGAAGATAAGACGCTGCTGATCGGGGGGA 13355 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| ||||| || | ||||| || || | || | || || || || || Sbjct 13356 ATACCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATGGTATCCGAGCTCTCGACC 13415 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || ||||| || | ||| || || || |||||||| || Sbjct 13416 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATGTT 13465 >seq18924 Length=24070 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||| | || || || || || || || ||||| || || || | ||| || Sbjct 17544 CGAAGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCG 17603 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || ||||| | || | | ||||| || || ||||||||||| ||| Sbjct 17604 TCCTCAAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCGGGAGGAATACCCTCCTTG 17663 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || || || | || | ||||| || || ||||| || || || Sbjct 17664 TCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCCGAGCTCTCGACTTCGAGGGTGATC 17723 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| || || || || || |||||||| Sbjct 17724 GTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 17758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385106063287818