Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq24030 118 2e-21 seq22901 118 2e-21 seq18924 107 4e-18 seq22211 98.7 2e-15 seq23826 93.3 8e-14 seq21554 91.5 3e-13 seq23480 87.8 4e-12 >seq24030 Length=66970 Score = 118 bits (130), Expect = 2e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| |||||||| || || || || || || |||| || | | || Sbjct 65975 ACGAAGGACGAGGTGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGCCAGGGTGCGGCC 66034 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || || ||||| ||||| || | || || || || || || || ||||| Sbjct 66035 GTCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTT 66094 Query 82715 ATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA 82773 || || ||||| ||||| || || || |||||||| ||| || ||||| | || | Sbjct 66095 GTCCTGGATCTTCTGCTTC-ACGTTCTCGATCGTATCGCTAGACTCGACTTCGAGGGTGA 66153 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| ||||| ||||| || || |||||||| Sbjct 66154 TCGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 66190 >seq22901 Length=26441 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| | || || || || ||||| || || ||||| ||||| || ||||| || | Sbjct 2981 ACCTCCGCGCAGGCGTAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTATACTCGGC 2922 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | ||||| || || ||||| ||||||||||| | | || ||||| ||||| Sbjct 2921 GAGCGTACGGCCGTCCTCCAGCTGTTTGCCAGCAAAGATCAAGCGCTGCTGATCGGGAGG 2862 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 ||||||||||| || || | ||| || || ||| |||||| ||||| ||| || Sbjct 2861 AATTCCTTCCTTGTCCTGCAGCTTAGCCTTGACAGCTTCAATGGTATCGGAAGGACTCAC 2802 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| |||| | |||||| || | ||||| | || |||||||| Sbjct 2801 ATCCACGGTTACGGACTTGCCAGTGAGGGTCTTGATGAAGATCTGCAT 2754 >seq18924 Length=24070 Score = 107 bits (118), Expect = 4e-18 Identities = 157/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| |||||||| || ||||| || || || || | || | | ||| Sbjct 17544 CGAAGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCG 17603 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||| ||||| || | || || || ||||| || || ||||| Sbjct 17604 TCCTCAAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCGGGAGGAATACCCTCCTTG 17663 Query 82716 TCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773 || || ||||| ||||| || || || ||||| || || | || ||||| | || | Sbjct 17664 TCCTGGATCTTCTGCTTC-ACGTTCTCGATCGTGTCCG-AGCTCTCGACTTCGAGGGTGA 17721 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| ||||| ||||| || || |||||||| Sbjct 17722 TCGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 17758 >seq22211 Length=15201 Score = 98.7 bits (108), Expect = 2e-15 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | || ||| || || | ||| ||||| || || ||||| || || || || | Sbjct 4203 TACCTCCACGCAGACGAAGCACGAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGG 4144 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||||| || || || || ||||| ||||| || | || || || || | Sbjct 4143 CCAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCGGGGG 4084 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCT 82760 | || || ||||| || || |||||| || || ||||| || || || || | || Sbjct 4083 GAATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTTTCGATGGTGTCCG-AGCTCTCG 4025 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 || || | || ||||||||||| || | ||||| || || |||||||| || Sbjct 4024 ACCTCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCATAAT 3972 >seq23826 Length=10614 Score = 93.3 bits (102), Expect = 8e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| || || | ||| || || || || ||||| || || || || | Sbjct 8521 TACCGCCACGCAGACGAAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 8462 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | ||||| || || || || || || ||||| || | || ||||| || | Sbjct 8461 CAAGAGTGCGGCCGTCCTCGAGCTGCTTACCCGCGAAGATAAGACGCTGCTGATCGGGGG 8402 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || |||||| || || ||||| || || || | || | Sbjct 8401 GAATACCCTCCTTGTCCTGGATCTTTTGCTTCACGTTTTCGATGGTGTCCGAGGACTCGA 8342 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || ||||||||||| || | ||||| || || |||||||| Sbjct 8341 CCTCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 8293 Score = 86.0 bits (94), Expect = 1e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| ||||| || || |||||||| || || || | || | | ||| Sbjct 8963 CGGAGCACAAGGTGGAGAGTGGACTCCTTCTGTATGTTGTAGTCGGCAAGGGTACGGCCG 8904 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || ||||| || | || || || || || || || ||||| Sbjct 8903 TCCTCGAGCTGCTTACCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTG 8844 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || |||||| || || || ||||| || || | || || || | || ||| Sbjct 8843 TCCTGGATCTTTTGCTTCACGTTCTCAATAGTGTCCGAGGACTCGACCTCGAGGGTGATC 8784 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| || || |||||||| Sbjct 8783 GTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 8749 >seq21554 Length=44846 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||| || || || || ||||| || ||||| || || | | | Sbjct 20463 CGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATACTCGCCGAGCGTACGGCTA 20404 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||| ||||| | | || ||||| || || ||||||||||| Sbjct 20403 TCCTCCAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCGGGGGGAATTCCTTCCTTG 20344 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| | ||| || |||||| |||||| ||||| ||| || |||| ||| | Sbjct 20343 TCTTGCAGCTTAGCCTTTACAGCTTCAATGGTATCGGAAGGACTCACATCCACAGTGACG 20284 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || | ||||| | || |||||||| Sbjct 20283 CTCTTGCCAGTGAGGGTCTTGATGAAGATCTGCAT 20249 >seq23480 Length=26370 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | || || || | ||| || || || || ||||| || || || || | Sbjct 12780 TACCTCCGCGAAGGCGAAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 12839 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||||| || || || || ||||| ||||| || | || || || || | Sbjct 12840 CAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCAGGGG 12899 Query 82702 GTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || |||||||| || || ||||| ||||| || || || || ||||| | | || Sbjct 12900 GAATGCCTTCCTTGTCCTGGATCTTCTGCTTC-ACGTTCTCGATGGTATCGCTCGACTCG 12958 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTT 82795 || || | || ||||||||||| ||||| ||||| Sbjct 12959 ACCTCAAGGGTGATCGTCTTGCCGGTCAAGGTCTT 12993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981524055329222