Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq23480 100 2e-16 seq22211 91.5 1e-13 seq22955 86.0 4e-12 seq24030 84.2 1e-11 seq22901 82.4 5e-11 >seq23480 Length=26370 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | ||| | || || || ||| || || |||||||| |||| | Sbjct 12554 CCACCACGCAGACGGAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCG 12613 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | || || ||||| || || | ||||||||| || | || Sbjct 12614 AGAGTGCGGCCGTCCTCAAGCTGCTTACCGGCGAAGATAAGACGCTGCTGGTCGGGGGGA 12673 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || ||||| |||| ||| || | ||| ||||| || || || Sbjct 12674 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CATTCTCGATGGTATCGCTCGACTCGAC 12732 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || ||||| || | || || || |||||||||||| Sbjct 12733 TTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATA 12781 >seq22211 Length=15201 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| ||||| |||||||| |||| || || || |||| || | || || ||||| || Sbjct 4394 CTCCTTTTGAATGTTGTAGTCGGCCAGCGTACGACCGTCCTCAAGCTGCTTGCCGGCGAA 4335 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | |||||||| || | || | ||| || ||||| ||| ||||| |||| | | Sbjct 4334 GATGAGGCGCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTCTGCTTCA-CGT 4276 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | ||| ||||| || || || || | || || || ||||| || || || || | Sbjct 4275 TCTCGATGGTATCGCTCGACTCGACTTCGAGAGTAATGGTCTTACCGGTCAAAGTCTTGA 4216 Query 33737 CAAAGATCTGCATA 33750 | |||||||||||| Sbjct 4215 CGAAGATCTGCATA 4202 >seq22955 Length=9686 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||| || || || |||| || | || || || || || Sbjct 7961 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTACCAGCGAA 8020 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | ||||||||| || | || | || || ||||| || ||||| |||| ||| Sbjct 8021 GATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CAT 8079 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | ||| ||||| || || || || | |||||||| ||||| || | || || | Sbjct 8080 TCTCGATGGTATCGCTCGACTCGACTTCGAGGGTGATCGTCTTACCCGTGAGGGTCTTGA 8139 Query 33737 CAAAGATCTGCATA 33750 | |||||||||||| Sbjct 8140 CGAAGATCTGCATA 8153 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| ||||| |||||||| |||| || || || |||| || | || || ||||| || Sbjct 8189 CTCCTTTTGGATGTTGTAGTCGGCAAGCGTACGACCGTCCTCAAGCTGCTTACCGGCGAA 8248 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | |||||||| || | || | ||| || ||||| || ||||| |||| | | Sbjct 8249 GATAAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTCA-CGT 8307 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | ||| ||||| || || || || | || || || ||||| || || || || | Sbjct 8308 TCTCGATGGTATCGCTCGACTCGACTTCGAGAGTAATGGTCTTACCGGTCAAAGTCTTGA 8367 Query 33737 CAAAGATCTGCATA 33750 | |||||||||||| Sbjct 8368 CGAAGATCTGCATA 8381 >seq24030 Length=66970 Score = 84.2 bits (92), Expect = 1e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||| ||| ||||| |||||||| || | || ||||| |||| || | || Sbjct 65988 TGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGCCAGGGTGCGGCCGTCCTCAAGCTGC 66047 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || || || || | |||||||| || | || | ||| || ||||| || ||| Sbjct 66048 TTGCCAGCGAAGATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTC 66107 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || |||| | | || | || ||||| || || || || | |||||||| || || || Sbjct 66108 TGCTTCA-CGTTCTCGATCGTATCGCTAGACTCGACTTCGAGGGTGATCGTCTTGCCAGT 66166 Query 33726 TAACGTTTTTACAAAGATCTGCATA 33750 || || || || |||||||||||| Sbjct 66167 CAAGGTCTTGACGAAGATCTGCATA 66191 >seq22901 Length=26441 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || | || |||| |||||| || || ||| || || || ||||| || |||| Sbjct 2981 ACCTCCGCGCAGGCGTAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTATACTCGGC 2922 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || |||| |||| ||||| || ||||| ||||| ||||||||||| | || Sbjct 2921 GAGCGTACGGCCGTCCTCCAGCTGTTTGCCAGCAAAGATCAAGCGCTGCTGATCGGGAGG 2862 Query 33642 CACACCTTCTTTGTC 33656 | ||||| ||||| Sbjct 2861 AATTCCTTCCTTGTC 2847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328607461484160