Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq23925 86.0 5e-12 >seq23925 Length=43003 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 104329 CAGAGCGCACATTGCCTAAATCGCCGACGTGACGTTCCGCAGCGTCAGGCGCGCCATG-T 104387 ||| | | || ||||| | ||||||||||||||||| | |||||||| |||| || | Sbjct 10119 CAGCGAGGACGTTGCCCAGGTCGCCGACGTGACGTTCGTCGTCGTCAGGCCCGCCGTGCT 10178 Query 104388 TGTTGGTGTGTGGGGTTAAAGTGCTCGCCTGCCGACGTGCACCCATTGCTAATGTCGCCA 104447 | ||| ||| || || |||||| | || || | |||||||||| | |||| ||| Sbjct 10179 TCTTGCCGTGAGGA-TTGAAGTGCGCACCGGCGCTCACGCACCCATTGGTGTTGTCCCCA 10237 Query 104448 AACTCGTGCACGTGAAAACCATGC 104471 |||||||| ||||| || || ||| Sbjct 10238 AACTCGTGGACGTGGAAGCCGTGC 10261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402211438059584