Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq23741 100 4e-16 >seq23741 Length=113318 Score = 100 bits (110), Expect = 4e-16 Identities = 228/339 (67%), Gaps = 12/339 (4%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| || ||||| || || || |||||||| | || || | ||||| || || | || Sbjct 78325 GCAAGCAAAGTCGCAGTGAAGACCCTCATCGCGGCTGATGAGCTCGTTCGAGAAGGCAAG 78266 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGA 39734 |||||||| || || ||||| |||||||| || ||||| ||| ||| | ||||| |||| Sbjct 78265 ACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGC-GCAGAAGGAGCCAGAGAAGA 78207 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAA----CTTG----TATC 39786 ||||||| || || || || || | || || | ||||| || || | || Sbjct 78206 AGATGCCCTCGACAGCGGCGAAGCCGACCAG--ACGCTCCGCAAAGGTCTCGACGCCGTC 78149 Query 39787 ATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTAT 39846 || ||||||||| | ||||| || || |||||||| || | | || || || || Sbjct 78148 CTTGGCAATCCACTTCAGGGCCCACTCCGCCTTCTTCTTGACCGAGGCCACCGTCTCGAT 78089 Query 39847 AGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACT 39906 ||| || || || || || | || || || || || || || | || Sbjct 78088 GGCACGGAACAGGCGATCCTTCTCCACCGCGTCCTTTACGTACGTGTCGATCAGGAGCGA 78029 Query 39907 ATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAA 39945 |||||||| || || ||||| ||||| || ||||| || Sbjct 78028 GTACATTTCCGAGTGAATGTTCTCAATGGCGATCTGCAA 77990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686701885896720