Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq19772 120 3e-22 seq18924 102 7e-17 seq24030 96.9 3e-15 seq22955 87.8 2e-12 >seq19772 Length=5961 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| || |||| |||| ||| | || | || || || |||||||| ||||||||| Sbjct 1323 GCCACCACGCAGACGCAGTACGAGGTGGAGGGTTGATTCCTTTTGAATGTTGTAGTCGGC 1382 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || | |||| ||||||||||||| || || ||| | ||||| ||||| || || || || Sbjct 1383 CAGGGTGCGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGAGG 1442 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || |||||| | |||| | |||| | ||||| | | || || Sbjct 1443 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTTTCGATCGTGTCGCTCGACTCGAC 1502 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| ||||| || | || ||||||| || || || ||||| |||||| Sbjct 1503 TTCGAGAGTAATGGTCTTACCCGTCAAGGTCTTGACGAAGATCTGCATA 1551 Score = 100 bits (110), Expect = 2e-16 Identities = 144/202 (71%), Gaps = 1/202 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || || |||||||| | | |||| |||| || ||||| ||||| Sbjct 1810 GTAGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTCAAGCTGCTTACCA 1869 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || || || || | |||||| || || |||||| | ||| Sbjct 1870 GCGAAGATGAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTTTGCTTC 1929 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || || || || || | ||||| || || || Sbjct 1930 ACGTTCTCGATCGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTC 1989 Query 27231 TTCACAAAGATTTGCATAGCTG 27252 ||||| ||||| ||||| |||| Sbjct 1990 TTCACGAAGATCTGCAT-GCTG 2010 >seq18924 Length=24070 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | |||| ||||||||||||| ||||| Sbjct 18018 GTTGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCGAGCTGCTTACCA 18077 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| || || || || | || || || || |||||| | ||| Sbjct 18078 GCGAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTC 18137 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || || ||||| || | ||||| || || || Sbjct 18138 ACGTTCTCGATCGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTC 18197 Query 27231 TTCACAAAGATTTGCATAGCTGCT 27254 ||||| ||||| ||||| ||| || Sbjct 18198 TTCACGAAGATCTGCATGGCTACT 18221 >seq24030 Length=66970 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||||| || | || | || | || || || || || || |||||||| Sbjct 66192 CCTCCGCGCAGGCGAAGCACGAGGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCG 66251 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| |||| |||||||| || || ||| | ||||||||||| || || || || Sbjct 66252 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGGGGA 66311 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| || || |||||| | |||| | |||| | ||||| | || || || Sbjct 66312 ATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTTTCGATCGTGTCAGAGGACTCGACC 66371 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | ||||| || || || || || ||||| |||||| Sbjct 66372 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATA 66419 >seq22955 Length=9686 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| || | | || |||| |||||||| ||||| Sbjct 7956 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTACCA 8015 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || || || || | ||||| || || |||||| | ||| Sbjct 8016 GCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTC 8075 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | || || | | || ||||| || || || | || ||||| || || Sbjct 8076 ACATTCTCGATGGTATCGCTCGACTCGACTTCGAGGGTGATCGTCTTACCCGTGAGGGTC 8135 Query 27231 TTCACAAAGATTTGCATAGCT 27251 || || ||||| |||||| || Sbjct 8136 TTGACGAAGATCTGCATACCT 8156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424809599156976