Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq23003 98.7 3e-15 seq19361 87.8 6e-12 >seq23003 Length=12893 Score = 98.7 bits (108), Expect = 3e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 254978 ATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAA 255037 || || ||| ||||||| | |||| | ||||||||||| ||||| || || ||||| Sbjct 974 ATCCCCATGCTCCGTGTTTACAACGATACCGCTCGCTACGTTGATCAGGGCGGTGGCAAG 1033 Query 255038 CGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACAT 255084 ||| ||||||||| | ||||| ||||||||||||||||||||||| Sbjct 1034 CGCAAGGGAGCGTTCGCGATCTATCTGGAGCCGTGGCACGCCGACAT 1080 >seq19361 Length=29087 Score = 87.8 bits (96), Expect = 6e-12 Identities = 361/552 (65%), Gaps = 32/552 (6%) Strand=Plus/Minus Query 254978 ATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAA 255037 || || ||| | ||||| | |||| | ||||||||||| ||||| || || ||||| Sbjct 14699 ATCCCCATGCTTCGTGTCTACAACGATACCGCTCGCTACGTTGATCAGGGCGGTGGCAAG 14640 Query 255038 CGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACGGTTTTTA 255097 || ||||||||| | ||||| |||||||||||||||||||| | | || ||| Sbjct 14639 CGTAAGGGAGCGTTCGCGATCTATCTGGAGCCGTGGCACGCCGATA-TCTTCG--ATTTC 14583 Query 255098 CTGCTGTCCGACAAGACC---GGCACCGAGGAGCTGATCGCCCGCGACATCTACACCG-- 255152 || | | | |||| | |||| |||||| ||| || || ||| | || Sbjct 14582 CTTGAGCTCAAGAAGAACCATGGCAAGGAGGAGAACCGCGCTCGTGATCTCTTCTACGGC 14523 Query 255153 CTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGA-ACGAGACGAGACCTGGAGCCTC 255211 |||| ||||| | || ||||| ||| ||||| || | || | || ||| ||| Sbjct 14522 CTGT-GGGTGCCG-GACCTGTTCATGAAGCGCGTTGAGGCCGGAGGCGA-TTGGTCGCTC 14466 Query 255212 ATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACTG 255271 | ||||||||| | ||||||| || |||| | |||||||| ||||| ||| | | Sbjct 14465 TTCTGTCCCAACGAAGCGCCCGGCCTCTTCGAGTGCTGGGGTGAGGAGTTCGAAGAGAAG 14406 Query 255272 TATCTGGAGTACGAGCGTGCCGGCCG-GTTCG----TACGCCAAGTGCCCGCGAAGAAGA 255326 || || |||||| || || || | ||| || |||| |||| || || Sbjct 14405 TACGTGCGCTACGAGAATGAGGGACGCGCTCGCCGCGTCGTCAAG-GCCC----AGGAGC 14351 Query 255327 TCTGGAACACGATGGTGCGCAT-GCAGCTGGAAACCGGAATGCCGTTCCTATTGCACAAA 255385 | ||| | | || | || || ||| | || ||||| | ||| | | | | |||| Sbjct 14350 TGTGGTTCTCCATTCT-CGAATCACAGATCGAGACCGGCACGCCTTACATCCTTTACAAG 14292 Query 255386 GACCACATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCGGCTCGAACCTG 255445 ||| || || ||||||||| | |||| ||| || || | ||||||| || Sbjct 14291 GACTCGTGCAATGCCAAGTCGAACCAGCAGCACCTCGGCACCATCCAGTCCTCGAACTTG 14232 Query 255446 TGCACCGAG---ATTACGTTGCACACGTCAGCGCAAGAGGTGGCCGTTTGCAACTTGGCG 255502 ||||| ||| ||| ||| |||||| | | ||||| || || |||||| | ||| Sbjct 14231 TGCACGGAGGTCATTCAGTT---CACGTCTCCTGATGAGGTCGCAGTGTGCAACCTCGCG 14175 Query 255503 TCCATCTCGCTC 255514 || ||||||| Sbjct 14174 TC--GCTCGCTC 14165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587845592325610