Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq19361 223 4e-53 seq23003 181 1e-40 seq23741 111 2e-19 >seq19361 Length=29087 Score = 223 bits (246), Expect = 4e-53 Identities = 623/941 (66%), Gaps = 19/941 (2%) Strand=Plus/Plus Query 111220 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 111279 ||| ||||| ||||| |||| || || | ||||| || || |||||| | || Sbjct 14151 GACGTACTTCGGAAGAGCGAGCGACGCGAGGTTGCACACTGCGACCTCATCAGGAGACGT 14210 Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339 | ||| | | || || || ||||| || || || || || | | || ||||| Sbjct 14211 GAACTGAATGACCTCCGTGCACAAGTTCGAGGACTGGATGGTGCCGAGGTGCTGCTGGTT 14270 Query 111340 ACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 111399 ||| ||||||| |||||||| || ||||| ||||| || ||||| ||||||| Sbjct 14271 CGACTTGGCATTGCACGAGTCCTTGTAAAGGATGTAAGGCGTGCCGGTCTCGATCTGTGA 14330 Query 111400 TTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGC 111459 || |||||| | ||| | || ||| || | | | || |||||||| Sbjct 14331 TTCGAGAATGGAGAACCACAGCTCCTGGGCCTTGACGACGCGGCGAGCGCGTCCCTCATT 14390 Query 111460 CTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTG 111518 |||||| ||| |||| |||||||||||| | || ||| |||| || || | Sbjct 14391 CTCGTAGCGCACGTACTTCTCTTCGAACTCCTCACCC-CAGCACTCGAAGAGGCCGGGCG 14449 Query 111519 CCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGT 111578 | | || |||||||| || ||||| | || || ||||||| ||||||||||| |||| Sbjct 14450 CTTCGTTGGGACAGAAGAGCGACCAATCGCCTCCGGCCTCAACGCGCTTCATGAACAGGT 14509 Query 111579 CTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGA 111638 | || | ||||||| | |||||||| | | || ||| || | || ||||| Sbjct 14510 CCGGCACCCACAGGCCGTAGAAGAGATCACGAGCGCGGTTCTCCTCCTTGCCATGGTT-C 14568 Query 111639 GTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATA 111697 || | | ||||||||| || | |||||| |||||||| ||||| ||||||| |||| Sbjct 14569 TTCTTGAGCTCAAGGAAATCGAAGATATCGGCGTGCCACGGCTCCAGATAGATCGCGAAC 14628 Query 111698 GATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGA 111754 | |||||| || | || | |||| || ||||| || || |||| | || ||| Sbjct 14629 GCTCCCTTACGCTTGCCACCGCCCTGATCAACGTAGCGAGCGGTATCGTTGTAGACACGA 14688 Query 111755 AGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAA--TACGAGATTTATTGG 111812 ||||| || || | |||| || || || || || || | |||||| || | Sbjct 14689 AGCATGGGGATGAGTCCATTCGACGTTCCGTTGGTGCCGCGGATGTACGAG--TTCGAAG 14746 Query 111813 CTCTCACATCATGGATGTGCATC-CCAATACCCCCAGCCCACTTTGAGATTTGCGCACAC 111871 | | | || | | ||| | ||||| || || || |||| ||||| | || ||| Sbjct 14747 CGCGGATGCGGTGAACG-GCAACTCCAATGCCACCGGCAGACTTGGAGATGAGAGCGCAC 14805 Query 111872 TCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAA 111931 | | | || || | ||||| || | ||| ||||||||||| | | || |||||||| Sbjct 14806 TGCTTGAGCGTGTCGTAGATGCCCTCGATGGAGTCCTCCTTCATCGTGAGCAGGAAGCAC 14865 Query 111932 CTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAAC 111991 |||| |||||| | || || || || |||||||| || || || ||||| |||| Sbjct 14866 GACGACAGCTGCGGACGAGGCGTGCCCGCGTTGAAGAGAGTAGGAGTGGCGTGCGTGAAG 14925 Query 111992 ATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATG 112051 | || || | ||||||||||||| || | |||| ||| ||| | | Sbjct 14926 AGCTGCTGCGAGAGGAGATCGTATGTCTCCAGCACGGCGGGGATGTTGTCCGTGTGAAGG 14985 Query 112052 CCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGT 112111 |||| ||||||| ||||| ||||| ||| || |||| || || || || | | | Sbjct 14986 CCGACGGCGACCCTCATGAGCATGTGCTGCGGCCGCTCCACGATGACTCCGTCAATC--T 15043 Query 112112 TGAAGA--TA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 |||||| || | | | || ||||| |||| ||||||||| Sbjct 15044 TGAAGAGGTACGAGCGT-TCGAGGGTCTTGAAACCAAAGTA 15083 >seq23003 Length=12893 Score = 181 bits (200), Expect = 1e-40 Identities = 614/941 (65%), Gaps = 19/941 (2%) Strand=Plus/Minus Query 111220 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 111279 ||| ||||| ||||| |||| || || | ||||| ||||| |||||| | || Sbjct 1522 GACGTACTTGGGAAGAGCGAGCGACGCGAGGTTGCACACAGCGACCTCATCAGGAGACGT 1463 Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339 ||||| | | || || || ||||| || || || || || | | || ||||| Sbjct 1462 GTACTGAATGACCTCCGTGCACAAGTTCGAGGACTGGATGGTGCCAAGGTGCTGCTGGTT 1403 Query 111340 ACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 111399 ||| ||||||| |||||| ||||| ||||| ||||| || ||||| |||| || Sbjct 1402 CGACTTGGCATTGCACGAATCCTTATAGAGGATGTAAGGCGTGCCGGTCTCGATCTGCGA 1343 Query 111400 TTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACAAT--GGCGTTGGCCCGTCCCTCC 111457 | |||||| | ||| | || ||| || | |||| || || || || Sbjct 1342 CTCGAGAATGGAGAACCACAGCTCCTGGGCCTTGACGACACGGCGA--GCGCGGCCTTCG 1285 Query 111458 GCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGG 111516 |||||| ||| | || ||||| || ||| | || ||| |||| ||||| Sbjct 1284 TTCTCGTAACGCACGTACTTCTCCTCGAACTCGTCGCCC-CAGCACTCGAAGAGGCCTGG 1226 Query 111517 TGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAG 111576 || | || || ||||| || ||||| | || || |||| || ||||||||||| || Sbjct 1225 CGCTTCGTTGGGGCAGAAGAGCGACCAGTCGCCTCCGGCCTCGACGCGCTTCATGAACAG 1166 Query 111577 GTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTT 111636 ||| || | ||||||| | |||||||| | | || ||| || | || ||||| Sbjct 1165 GTCGGGCACCCACAGGCCATAGAAGAGATCACGAGCACGGTTCTCCTCCTTGCCATGGTT 1106 Query 111637 GAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA 111695 || | | ||||||||| || | ||| || |||||||| ||||| ||||||| |||| Sbjct 1105 -CTTCTTGAGCTCAAGGAAATCGAAGATGTCGGCGTGCCACGGCTCCAGATAGATCGCGA 1047 Query 111696 TAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGC 111752 | |||||| || | || | |||| || ||||| || || |||| | || | Sbjct 1046 ACGCTCCCTTGCGCTTGCCACCGCCCTGATCAACGTAGCGAGCGGTATCGTTGTAAACAC 987 Query 111753 GAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGG 111812 | ||||| || || | || | ||| || || || || || || || || | Sbjct 986 GGAGCATGGGGATGAGTCCGTTGGATGTTCCGTTGGTGCCGCGGATGTAGGAGTTCGAAG 927 Query 111813 CTCTCACATCATGGATGTGCATC-CCAATACCCCCAGCCCACTTTGAGATTTGCGCACAC 111871 | | | |||| | ||| | ||||| || || || |||| ||||| | || ||| Sbjct 926 CGCGGATGCGGTGGACG-GCAACACCAATGCCACCTGCGGACTTGGAGATGAGAGCGCAC 868 Query 111872 TCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAA 111931 | | | || || | ||||| || | ||| ||||||||||| | | || |||||||| Sbjct 867 TGCTTGAGCGTGTCGTAGATGCCCTCGATGGAGTCCTCCTTCATCGTGAGCAGGAAGCAC 808 Query 111932 CTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAAC 111991 || | |||||| | || || || || |||||||| || || || ||||| |||| Sbjct 807 GACGAGAGCTGCGGACGAGGCGTGCCCGCGTTGAAGAGAGTAGGAGTGGCGTGCGTGAAG 748 Query 111992 ATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATG 112051 | || || | ||| || ||||||| || | |||| ||| ||| | | Sbjct 747 AGCTGCTGAGAAAGGAGGTCATAGGTCTCCAGCACGGCGGGGATGTTGTCCTTGTGAAGG 688 Query 112052 CCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGT 112111 || | ||||||| ||||| ||||| ||| || |||| || || || |||| | | Sbjct 687 CCCACGGCGACCCTCATGAGCATGTGCTGCGGCCGCTCCACGATGACTCCGTCGATC--T 630 Query 112112 TGAAGA--TA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 |||||| || | | | || ||||| |||| ||||||||| Sbjct 629 TGAAGAGGTACGAGCGT-TCGAGGGTCTTGAAACCAAAGTA 590 >seq23741 Length=113318 Score = 111 bits (122), Expect = 2e-19 Identities = 270/397 (68%), Gaps = 19/397 (5%) Strand=Plus/Minus Query 122481 GAGGAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 122540 ||| |||||||| | ||| |||| ||||||| | |||| | | |||||| ||||| Sbjct 78499 GAGCAGACGATCGGCGACAAACTCGATGTACTGGCACATGAGGTTGGCGTTCATGCCGAT 78440 Query 122541 GAG-GTTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCA 122599 ||| | || ||||| | || || |||| | ||||||||||| || ||||| || Sbjct 78439 GAGCGCGACG-GGGAGCGACTCAGTGACGAACTCCTTCTCAATCTCGACGGCCTC---CA 78384 Query 122600 CGATG----GCGTGGATAGTTTCGGTAGTGGGTCTATT-ACG--CAAAGTCTTGAAGAGC 122652 |||| || ||| | | || || || | || ||| || | | || ||| Sbjct 78383 GGATGATCTGCTTGGGCACGTCCGAG-GTCGGCTTGTTGACGAGCATGCTGTAGAGGAGG 78325 Query 122653 TCCACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCAT 122712 || | |||| || ||| ||||||||||| ||| || || || || |||||| Sbjct 78324 --CAAG-CAAAGTCGCAGTGAAGACCCTCATCGCGGCTGATGAGCTCGTTCGAGAAGGCA 78268 Query 122713 AGACCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAG 122772 ||||| |||||||| || |||||||| | ||| | || |||||||| || || |||||| Sbjct 78267 AGACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCAGAGAAG 78208 Query 122773 AAGATACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG-AGCGAGACTTTGC 122831 ||||| ||||| ||| || || | | || || || || |||| ||| | | | Sbjct 78207 AAGATGCCCTCGACAGCGGCGAAGCCGACCAGACGCTCCGCAAAGGTCTCGACGCCGTCC 78148 Query 122832 AT--CAAACCATTTCATTGCCCATTTCGCCTTCTTCT 122866 | ||| ||| |||| ||||| | ||||||||||| Sbjct 78147 TTGGCAATCCACTTCAGGGCCCACTCCGCCTTCTTCT 78111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627842821060800