Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq19361 187 3e-42 seq23003 163 3e-35 seq23741 140 4e-28 seq21891 89.7 6e-13 seq23882 84.2 3e-11 >seq19361 Length=29087 Score = 187 bits (206), Expect = 3e-42 Identities = 731/1128 (65%), Gaps = 41/1128 (4%) Strand=Plus/Minus Query 104156 TATTTTGGTCTCAAAACCCTTGAGAAGAGC-TA--TCTTCAACGGCTCGATGGTGTCTTG 104212 || |||||| |||| ||||| || | | | || ||||||| | | || || ||| | Sbjct 15083 TACTTTGGTTTCAAGACCCTCGA-ACGCTCGTACCTCTTCAA--GATTGACGGAGTCATC 15027 Query 104213 ATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATT 104272 |||| || ||| ||||| ||||| | || ||| |||| |||| ||| |||| Sbjct 15026 GTGGAGCGGCCGCAGCACATGCTCATGAGGGTCGCCGTCGGCCTTCACACGGACAACATC 14967 Query 104273 GATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCA 104332 | || ||||||||||||| | || || | |||| ||||| || || Sbjct 14966 CCCGCCGTGCTGGAGACATACGATCTCCTCTCGCAGCAGCTCTTCACGCACGCCACTCCT 14907 Query 104333 ACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAAC 104392 || |||||||| || || || || | || || |||| |||||||| || | | Sbjct 14906 ACTCTCTTCAACGCGGGCACGCCTCGTCCGCAGCTGTCGTCGTGCTTCCTGCTCACGATG 14847 Query 104393 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 104452 ||||||||||| ||| | || ||||| | || || | | |||| || | ||||| ||| Sbjct 14846 AAGGAGGACTCCATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCTCTCATCTCCAAG 14787 Query 104453 TGGGCTGGGGGTATTGG-GATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA--TT 104509 | || || || ||||| | ||| | | || | | || || |||||| | Sbjct 14786 TCTGCCGGTGGCATTGGAGTTGC-CGTTCACCGCATCCGCGCTTCGAA--CTCGTACATC 14730 Query 104510 CGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACA 104569 || || || || || || |||| | || || |||||||| || | |||| || Sbjct 14729 CGCGGCACCAACGGAACGTCGAATGGACTCATCCCCATGCTTCGTGTCTACAACGATACC 14670 Query 104570 GCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAG 104626 || ||||| || |||| | || | || |||||| | |||| ||||||| ||| Sbjct 14669 GCTCGCTACGTTGATCAGGGCGGTGGCAAGCGTAAGGGAGCGTTCGCGATCTATCTGGAG 14610 Query 104627 CCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAG 104686 || |||||||| |||||| | || ||||||||| | ||||| || | |||||| Sbjct 14609 CCGTGGCACGCCGATATCTTCGATTTCCTTGAGCTCAAGAAGAACCATGGCAAGGAGGAG 14550 Query 104687 G--CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAG 104744 |||| | || |||||||||| || || ||| | || || || ||||||||| | | Sbjct 14549 AACCGCGCT--CGTGATCTCTTCTACGGCCTGTGGGTGCCGGACCTGTTCATGAAGCGCG 14492 Query 104745 TTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-T 104803 |||||| | ||| ||||||| ||||| ||||| || | || || || |||| ||| | Sbjct 14491 TTGAGGCCGGAGGCGATTGGTCGCTCTTCTGTCCCAACGAAGCGCCCGGCCTCTTCGAGT 14432 Query 104804 GCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGC-GAC 104862 || | |||||||||||| |||| ||| |||||| | || || || || | Sbjct 14431 GCTG-GGGTGAGGAGTTCGAAGAGAAGTACGTGCGCTACGAGAATGAGGGACGCGCTCGC 14373 Query 104863 TGCGACGGTGCCAGCTGCC---GATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGAC 104919 ||| || | || ||| || ||||| | |||||| | || || | |||||| Sbjct 14372 CGCGTCG--TCAAG--GCCCAGGAGCTGTGGTTCTCCATTCTCGAATCACAGATCGAGAC 14317 Query 104920 TGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTT 104979 || || || ||||| |||||||| ||| | || || ||| || || || | | Sbjct 14316 CGGCACGCCTTACATCCTTTACAAGGACTCGTGCAATGCCAAGTCGAACCAGCAGCACCT 14257 Query 104980 GGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGA 105039 || ||| || || || | || || || || | | || || ||||| Sbjct 14256 CGGCACCATCCAGTCCTCGAACTTGTGCACGGAGGTCATTCAGTTCACGTCTCCTGATGA 14197 Query 105040 GACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAA 105099 | || ||||| |||||||| || ||||||| || ||||| || | || | | || Sbjct 14196 GGTCGCAGTGTGCAACCTCGCGTCGCTCGCTCTTCCGAAGTACGTCG-TCAACGGCCA-- 14140 Query 105100 GACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAG 105159 || ||| | | || || ||| || || ||||| ||||| |||| Sbjct 14139 ---GTTCGATCACAAGAAGCTTTTCGACGTGGTCAAGGTCGTCACGCGCAACCTCAACAA 14083 Query 105160 AGTTATTGATAGAAATTTTTACCC---CGTTGAGACTGCTCGTAAATCTAATATGAGACA 105216 || || || | || | || || | ||||| || || || || || ||| | || Sbjct 14082 GGTGATCGACATCAACTACTATCCAGTCATTGAG---GCCCGCAACTCGAACATGCGTCA 14026 Query 105217 CCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCT 105264 ||| || || ||||| |||||||||||||| || || || ||||| || Sbjct 14025 CCGCCCGATCGGTCTTGGTGTTCAGGGTCTTGCCGACGTCTTCATGCT 13978 >seq23003 Length=12893 Score = 163 bits (180), Expect = 3e-35 Identities = 723/1125 (64%), Gaps = 35/1125 (3%) Strand=Plus/Plus Query 104156 TATTTTGGTCTCAAAACCCTTGAGAAGAGC-TA--TCTTCAACGGCTCGATGGTGTCTTG 104212 || |||||| |||| ||||| || | | | || ||||||| | |||| || ||| | Sbjct 590 TACTTTGGTTTCAAGACCCTCGA-ACGCTCGTACCTCTTCAA--GATCGACGGAGTCATC 646 Query 104213 ATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATT 104272 |||| || ||| ||||| ||||| | || ||| | || |||| ||| |||| Sbjct 647 GTGGAGCGGCCGCAGCACATGCTCATGAGGGTCGCCGTGGGCCTTCACAAGGACAACATC 706 Query 104273 GATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCA 104332 | || ||||||| || ||| | || || | |||| ||||| || || Sbjct 707 CCCGCCGTGCTGGAGACCTATGACCTCCTTTCTCAGCAGCTCTTCACGCACGCCACTCCT 766 Query 104333 ACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAAC 104392 || |||||||| || || || || | || || | || |||||||| || | | Sbjct 767 ACTCTCTTCAACGCGGGCACGCCTCGTCCGCAGCTCTCGTCGTGCTTCCTGCTCACGATG 826 Query 104393 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 104452 ||||||||||| ||| | || ||||| | || || | | |||| || | ||||| ||| Sbjct 827 AAGGAGGACTCCATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCTCTCATCTCCAAG 886 Query 104453 TGGGCTGGGGGTATTGG-GATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCG 104511 | || || || ||||| | ||| | |||| | | || || || || || Sbjct 887 TCCGCAGGTGGCATTGGTGTTGC-CGTCCACCGCATCCGCGCTTCGAACTCCTACATCCG 945 Query 104512 GGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 104571 || || || || ||| | || | || || ||||| || || | |||| || || Sbjct 946 CGGCACCAACGGAACATCCAACGGACTCATCCCCATGCTCCGTGTTTACAACGATACCGC 1005 Query 104572 GCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCC 104628 ||||| || |||| | || | || |||||| | |||| ||||||| ||||| Sbjct 1006 TCGCTACGTTGATCAGGGCGGTGGCAAGCGCAAGGGAGCGTTCGCGATCTATCTGGAGCC 1065 Query 104629 ATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGC 104688 |||||||| || ||| | || ||||||||| | ||||| || | |||||| Sbjct 1066 GTGGCACGCCGACATCTTCGATTTCCTTGAGCTCAAGAAGAACCATGGCAAGGAGGAGAA 1125 Query 104689 GCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG 104747 || ||| || |||||||||| | || ||| | || || || ||||||||| | || | Sbjct 1126 CCG-TGCTCGTGATCTCTTCTATGGCCTGTGGGTGCCCGACCTGTTCATGAAGCGCGTCG 1184 Query 104748 AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCC 104806 ||| | ||| | ||||| ||||| || || || | || || || |||| ||| ||| Sbjct 1185 AGGCCGGAGGCGACTGGTCGCTCTTCTGCCCCAACGAAGCGCCAGGCCTCTTCGAGTGCT 1244 Query 104807 GTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGA-CTGC 104865 | ||| || ||||| || | ||| |||||| | ||||| || || | | Sbjct 1245 G-GGGCGACGAGTTCGAGGAGAAGTACGTGCGTTACGAGAACGAAGGCCGCGCTCGCCGT 1303 Query 104866 GACGGTGCCAGCTGCCGATG---TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGG 104922 | || | || ||| | | ||||| | |||||| |||| || | |||||| || Sbjct 1304 GTCGT--CAAG--GCCCAGGAGCTGTGGTTCTCCATTCTCGAGTCGCAGATCGAGACCGG 1359 Query 104923 TACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGG 104982 || || ||||| || || || || | || || ||| || || || | | || Sbjct 1360 CACGCCTTACATCCTCTATAAGGATTCGTGCAATGCCAAGTCGAACCAGCAGCACCTTGG 1419 Query 104983 TGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGAC 105042 ||| || || || | || || || || | | | || |||||| Sbjct 1420 CACCATCCAGTCCTCGAACTTGTGCACGGAGGTCATTCAGTACACGTCTCCTGATGAGGT 1479 Query 105043 GGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC 105102 |||||||| |||||||| || ||||||| |||||||| || | || | |||| Sbjct 1480 CGCTGTGTGCAACCTCGCGTCGCTCGCTCTTCCCAAGTACGTCG-TCAACGGACAG---- 1534 Query 105103 ATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGT 105162 || ||| | | || ||| |||| || ||| |||||| ||||| |||| || Sbjct 1535 -TTCGATCACAAGAAGCTCTACGACGTGGTCAAAGTAGTCACCCGCAACCTCAACAAGGT 1593 Query 105163 TATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCG 105219 || || | || | ||||| || |||| || || || || || ||| | ||||| Sbjct 1594 GATCGACATCAACTACTACCCAGTCCCTGAG---GCCCGCAACTCGAACATGCGCCACCG 1650 Query 105220 TCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCT 105264 ||| || ||||| |||||||||||||| || || || || || || Sbjct 1651 TCCGATCGGTCTTGGTGTTCAGGGTCTTGCCGACGTCTTTATGCT 1695 >seq23741 Length=113318 Score = 140 bits (154), Expect = 4e-28 Identities = 163/216 (75%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 94746 TCAA-AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG-CGTT----CCTT 94799 |||| ||||| ||||| ||||| |||||||| ||| ||| | || ||| |||| Sbjct 78108 TCAAGAAGAAGGCGGAGTGGGCCCTGAAGTGGATTGC--CAAGGACGGCGTCGAGACCTT 78165 Query 94800 TGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTG 94859 ||| ||||| || ||| || || ||| ||||| |||||||||||||| |||||||| Sbjct 78166 TGCGGAGCGTCTGGTCGGCTTCGCCGCTGTCGAGGGCATCTTCTTCTCTGGCTCCTTCTG 78225 Query 94860 CGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCT 94919 ||| || | |||||||||||||| || |||||||| ||||| |||||| |||||||| Sbjct 78226 CGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTTGCCTTCTCGAACGAGCT 78285 Query 94920 TATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||| || || ||||| || ||| || ||||| Sbjct 78286 CATCAGCCGCGATGAGGGTCTTCACTGCGACTTTGC 78321 >seq21891 Length=78955 Score = 89.7 bits (98), Expect = 6e-13 Identities = 170/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 168455 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 168514 |||||||||||||| ||||| ||||||| |||| || | || | ||||| Sbjct 49354 GCATCCTTACCACCTTGAAGACGGCTACCAAAGCTACCAGCGGGATAGAGGACGTTGATG 49413 Query 168515 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCA 168574 ||||| || || | | || || ||||| |||||| || | ||||| | ||| Sbjct 49414 TTGTTCGAGCCGACGAAGCTATGCGCCATACCGACAATAGTCTTATTCAGAGACTCCTCA 49473 Query 168575 CCGTGGTGGTACGCACTCTTCTCTGCGACAAAT-GCCGCCAA-CTGCGCCACTTTCATCT 168632 || |||||||| || | | | | |||| | ||||| || ||| |||||| |||| Sbjct 49474 CCATGGTGGTATGC-CGAGTGT-AGAGACACGTAGCCGCTAAGCTGGGCCACTCGGATCT 49531 Query 168633 CATCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGAC 168692 | ||||||| |||||| |||||| | ||||| | ||||||||| |||||| |||| Sbjct 49532 CCTCCTTGATGTTCTTGCTGAAGCAAGTGTACAAGATCTTGCGTTGACCAGGCTTAAGAC 49591 Query 168693 CATCC 168697 | ||| Sbjct 49592 CGTCC 49596 >seq23882 Length=50760 Score = 84.2 bits (92), Expect = 3e-11 Identities = 201/296 (68%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 27279 GACATTTCCACGACGAGTTTCTACGCGAGCCATGTGATTACCGCGGGTGGTGTTGGTGGT 27338 ||||| ||||||| |||||||||||| || || || || || | || || || Sbjct 21377 GACATCGCCACGACCAGTTTCTACGCGTCTCACGTCATCACGGCCTGCGGCTCCGGGGGC 21318 Query 27339 ATGGTGATGTTCAATGACGAAGAACAACTCAAGAGAGCCCTCATGTTTAGGGATTGGGGT 27398 ||||| |||||||| || | || |||||| | ||| ||||| | | || ||||| Sbjct 21317 ATGGTCATGTTCAACTCGGACAAGCAGCTCAAGCGTGCCACCATGTATCGTGACTGGGGA 21258 Query 27399 CGCATCGGTGATAATGTAGAAGAACCTGGA-GAACGCTTCAACCACTCCGTAGATGGAAT 27457 || ||||| || || | | |||| |||| |||||||||| | || || ||||| Sbjct 21257 CGGATCGGCGACAA-CTCGGAGAAGGTGGAGGAACGCTTCACTGAGCAGGTGGACGGAAT 21199 Query 27458 CCCATATGATTGGAAGTTTCTCTACGGTGTCGCT-GGATATCACCTCAA-AGCTTGTGAG 27515 | ||| || ||||| || || || || ||| || || || |||| ||| | ||| Sbjct 21198 CGTATACGACACCAAGTTCCTGTATGGCGT-GCTGGGCTACAACTTCAAGAGC-AGCGAG 21141 Query 27516 ATGAATGCGGCATTTGGTCTTGTACAACTTGACAAACTTGATGGATTCCTCGCCAC 27571 | || || || ||||| ||||| || || || || | || || |||||||| Sbjct 21140 GTCAACGCCGCGTTTGGACTTGTCCAGCTCGATCGCCTAGCGGGCTTTCTCGCCAC 21085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583085107265520