Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq19772 136 1e-26 seq23603 118 3e-21 seq24030 113 1e-19 seq18924 109 2e-18 seq22901 105 2e-17 seq23089 91.5 4e-13 seq20137 91.5 4e-13 seq19092 91.5 4e-13 seq21554 87.8 5e-12 >seq19772 Length=5961 Score = 136 bits (150), Expect = 1e-26 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | || ||||| || ||||||||||| || || || || || || Sbjct 1776 CATACCACCGCGCAGGCGAAGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTC 1835 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || ||||| || || ||||| ||||| ||||| ||||| ||||| Sbjct 1836 AGCGAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGG 1895 Query 140627 AGGAATTCCTTCTTTATCCTGAAT-TTTAGCTTTTACATTATCAATCGAATCAGATGGTT 140685 ||||| || || || ||||| || ||| || || || || || |||| ||||| | | Sbjct 1896 GGGAATACCCTCCTTGTCCTGGATCTTTTGC-TTCACGTTCTCGATCGTGTCAGAGGACT 1954 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || ||||| || | ||||| ||||| || || || || || |||||||| Sbjct 1955 CGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 2006 >seq23603 Length=18425 Score = 118 bits (130), Expect = 3e-21 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | || || || || ||||||||||| || || || || || || Sbjct 24 CATACCACCGCGCAGGCGAAGCACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTC 83 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || ||||| || || ||||| ||||| || || ||||| || || Sbjct 84 GGCGAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCGGG 143 Query 140627 AGGAATTCCTTCTTTATCCTGAAT-TTTAGCTTTTACATTATCAATCGAATCAGATGGTT 140685 |||||| || || || ||||| || ||| || || || || || |||| ||||| | | Sbjct 144 AGGAATACCCTCCTTGTCCTGGATCTTTTGC-TTCACGTTCTCGATCGTGTCAGAGGACT 202 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || |||| ||||| || || || || || || || |||||||| Sbjct 203 CGACCTCGAGAGTAATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 254 >seq24030 Length=66970 Score = 113 bits (124), Expect = 1e-19 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 |||| | |||||||| | | || || || || ||||||||||| |||||||| || | Sbjct 65956 TTTAGTTGCCACCACGAAGACGAAGGACGAGGTGGAGAGTAGACTCCTTTTGAATGTTGT 66015 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | |||| | || || || || ||||| || || ||||| ||||| || || ||||| | Sbjct 66016 AGTCAGCCAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGT 66075 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| ||||| || || || ||||| || || || || || || |||| ||| | Sbjct 66076 CAGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTATCGCTAG 66135 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || || | ||||| || || | || || || || |||||||| Sbjct 66136 ACTCGACTTCGAGGGTGATCGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 66190 Score = 105 bits (116), Expect = 2e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || ||||||||||| || || || || || || Sbjct 66416 CATACCACCACGAAGACGGAGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTC 66475 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || ||||| || || ||||| ||||| || || ||||| ||||| Sbjct 66476 GGCCAGGGTACGACCGTCCTCAAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGG 66535 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || ||||| || || || || || || |||| ||| | || Sbjct 66536 GGGAATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTATCGCTAGACTC 66595 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || |||| ||||| || || | || || || || |||||||| Sbjct 66596 GACCTCGAGGGTAATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 66646 >seq18924 Length=24070 Score = 109 bits (120), Expect = 2e-18 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 17984 CATACCACCACGAAGGCGAAGCACGAGGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTC 18043 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || ||||| || || || ||||| ||||| || || ||||| || || Sbjct 18044 GGCGAGGGTGCGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCGGG 18103 Query 140627 AGGAATTCCTTCTTTATCCTGAAT-TTTAGCTTTTACATTATCAATCGAATCAGATGGTT 140685 ||| || ||||| || ||||| || ||| || || || || || |||| || || | | Sbjct 18104 AGGGATGCCTTCCTTGTCCTGGATCTTTTGC-TTCACGTTCTCGATCGTGTCGGAGGACT 18162 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || | ||||| ||||| || || || || || |||||||| Sbjct 18163 CGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 18214 Score = 105 bits (116), Expect = 2e-17 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 17756 CATACCACCACGAAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTC 17815 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || ||||| || || ||||| ||||| || || ||||| ||||| Sbjct 17816 GGCCAGGGTACGGCCGTCCTCAAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGG 17875 Query 140627 AGGAATTCCTTCTTTATCCTGAAT-TTTAGCTTTTACATTATCAATCGAATCAGATGGTT 140685 ||||| || || || ||||| || ||| || || || || || || | ||| | | Sbjct 17876 GGGAATACCCTCCTTGTCCTGGATCTTTTGC-TTCACGTTCTCGATGGTATCGCTCGACT 17934 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| || |||| ||||| || || || || || || || |||||||| Sbjct 17935 CGACTTCGAGCGTAATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 17986 Score = 104 bits (114), Expect = 7e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || ||||| || ||||||||||| || || || || || || | Sbjct 17532 CCACCACGCAGGCGAAGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCG 17591 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || || || ||||| || || ||||| ||||| || || ||||| || |||||| Sbjct 17592 AGGGTACGGCCGTCCTCAAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCGGGAGGA 17651 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || || ||||| || || || || || || |||| || || || ||| Sbjct 17652 ATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCCGAGCTCTCGACT 17711 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| || || | || || || || |||||||| Sbjct 17712 TCGAGGGTGATCGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 17758 >seq22901 Length=26441 Score = 105 bits (116), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| ||||| || || || || ||||| ||||| || | | || || || || || | Sbjct 2960 CAAG-TGAAGGGTGGATTCCTTCTGAATGTTATACTCGGCGAGCGTACGGCCGTCCTCCA 2902 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | ||||| ||||||||||| | || |||||||| |||||||||||||| || ||||| | Sbjct 2901 GCTGTTTGCCAGCAAAGATCAAGCGCTGCTGATCGGGAGGAATTCCTTCCTTGTCCTGCA 2842 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 ||||| || ||| ||||| | ||| || || || || | || || | ||| | Sbjct 2841 GCTTAGCCTTGACAGCTTCAATGGTATCGGAAGGACTCACATCCACGGTTACGGACTTGC 2782 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || | || |||||||| Sbjct 2781 CAGTGAGGGTCTTGATGAAGATCTGCAT 2754 >seq23089 Length=11362 Score = 91.5 bits (100), Expect = 4e-13 Identities = 73/86 (85%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 423760 TTAAGAGCATGGATGCCCGAGT-GGTCTAAGGGGGCAGACTTAAGATCTGCTGGCGAAAG 423818 || ||||| |||||| |||||| ||||||||| ||||||||||||||||||||| | | Sbjct 11360 TTGAGAGCCTGGATGGCCGAGTTGGTCTAAGGCGGCAGACTTAAGATCTGCTGGTGTTCG 11301 Query 423819 --CCTCGTGGGTTCAAACCCCACTCC 423842 || ||||||||| ||||||||||| Sbjct 11300 CACCGCGTGGGTTCGAACCCCACTCC 11275 >seq20137 Length=1436 Score = 91.5 bits (100), Expect = 4e-13 Identities = 73/86 (85%), Gaps = 3/86 (3%) Strand=Plus/Plus Query 423760 TTAAGAGCATGGATGCCCGAGT-GGTCTAAGGGGGCAGACTTAAGATCTGCTGGCGAAAG 423818 || ||||| |||||| |||||| ||||||||| ||||||||||||||||||||| | | Sbjct 909 TTGAGAGCCTGGATGGCCGAGTTGGTCTAAGGCGGCAGACTTAAGATCTGCTGGTGTTCG 968 Query 423819 --CCTCGTGGGTTCAAACCCCACTCC 423842 || ||||||||| ||||||||||| Sbjct 969 CACCGCGTGGGTTCGAACCCCACTCC 994 >seq19092 Length=1529 Score = 91.5 bits (100), Expect = 4e-13 Identities = 73/86 (85%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 423760 TTAAGAGCATGGATGCCCGAGT-GGTCTAAGGGGGCAGACTTAAGATCTGCTGGCGAAAG 423818 || ||||| |||||| |||||| ||||||||| ||||||||||||||||||||| | | Sbjct 528 TTGAGAGCCTGGATGGCCGAGTTGGTCTAAGGCGGCAGACTTAAGATCTGCTGGTGTTCG 469 Query 423819 --CCTCGTGGGTTCAAACCCCACTCC 423842 || ||||||||| ||||||||||| Sbjct 468 CACCGCGTGGGTTCGAACCCCACTCC 443 >seq21554 Length=44846 Score = 87.8 bits (96), Expect = 5e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || || || ||||| || ||||| ||||| || | || || | ||| || | Sbjct 20455 CAAG-TGGAGGGTGGACTCCTTCTGAATGTTATACTCGCCGAGCGTACGGCTATCCTCCA 20397 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || ||||| ||||| | || |||||||| || ||||||||||| || || || | Sbjct 20396 GCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCGGGGGGAATTCCTTCCTTGTCTTGCA 20337 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 ||||| |||||| ||||| | ||| || || || || | || || |||| | Sbjct 20336 GCTTAGCCTTTACAGCTTCAATGGTATCGGAAGGACTCACATCCACAGTGACGCTCTTGC 20277 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || | || |||||||| Sbjct 20276 CAGTGAGGGTCTTGATGAAGATCTGCAT 20249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514786556680694