Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq19361 228 9e-55 seq23003 217 2e-51 seq23741 131 2e-25 seq19224 98.7 1e-15 seq22186 89.7 6e-13 seq21891 82.4 8e-11 >seq19361 Length=29087 Score = 228 bits (252), Expect = 9e-55 Identities = 475/690 (69%), Gaps = 22/690 (3%) Strand=Plus/Minus Query 53272 CTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAG 53331 ||| ||||||||||| || || || |||||||| || ||| || || ||| ||||| Sbjct 14925 CTTCACGCACGCCACTCCTACTCTCTTCAACGCGGGCACGCCTCGTCCGCAGCTGTCGTC 14866 Query 53332 CTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGA 53391 ||||||||| | |||||||||| ||||| ||||| ||||||||||| ||||||||| | Sbjct 14865 GTGCTTCCTGCTCACGATGAAGGAGGACTCCATCGAGGGCATCTACGACACGCTCAAGCA 14806 Query 53392 GTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCG--GTATCCACTGCTCGAACGTCCG- 53448 ||| || | ||||||||||| | ||||| || | || || | || | |||| Sbjct 14805 GTGCGCTCTCATCTCCAAGTCTGCCGGTGGCATTGGAGTTGCCGTTCACCG--CATCCGC 14748 Query 53449 --TGCGAACGGCACACCAATCAAGGGGACGAACGG--CGTCGCCGATGGAATCGTGCCTA 53504 | ||||| | || ||| || || ||||| ||||| ||||| || | || | Sbjct 14747 GCTTCGAAC-TCGTAC--ATCCGCGGCACCAACGGAACGTCG--AATGGACTCATCCCCA 14693 Query 53505 TGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGG 53564 |||| || |||| |||| | || || || ||||| | ||||| ||||| ||||| |||| Sbjct 14692 TGCTTCGTGTCTACAACGATACCGCTCGCTACGTTGATCAGGGCGGTGGCAAGCGTAAGG 14633 Query 53565 GGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGC 53624 | ||||||| ||||| || ||||||||||||||||| || | || || || ||||| Sbjct 14632 GAGCGTTCGCGATCTATCTGGAGCCGTGGCACGCCGATATCTTCGATTTCCTTGAGCTCA 14573 Query 53625 GTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATT 53683 ||| || || | || |||| ||| ||||| || || ||| || |||||| | Sbjct 14572 AGAAGAACCATGGCAAGGAGGAGAACCGCGCTCGTGATCTCTTCTACGGC-CTGTGGGTG 14514 Query 53684 CCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAAC 53743 |||||||| |||||| | || ||| | | || |||| || | || || ||| Sbjct 14513 CCGGACCTGTTCATGAAGCGCGTTGAGGCCGGAGGCGATTGGTCGCTCTTCTGTCCCAAC 14454 Query 53744 GAGTGCCCCGGCCTC-CAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACG-T 53801 || ||||||||| | ||| || ||||||||||| | |||| ||| || || | Sbjct 14453 GAAGCGCCCGGCCTCTTCGAGTG-CTGGGGTGAGGAGTTCGAAGAGAAGTA-CGTGCGCT 14396 Query 53802 ACGCAGTTCAGGGCCGCTACAAGAAG-AAGGTCAAGGCGCGTGAGGTATGGGATGCAATC 53860 ||| | |||| ||| | | | |||||||| | ||| | ||| | || Sbjct 14395 ACGAGAATGAGGGACGC-GCTCGCCGCGTCGTCAAGGCCCAGGAGCTGTGGTTCTCCATT 14337 Query 53861 CTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAG 53920 ||| | ||| | ||||| || ||||| ||||| |||||||| ||| ||| | Sbjct 14336 CTCGAATCACAGATCGAGACCGGCACGCCTTACATCCTTTACAAGGACTCGTGCAATGCC 14277 Query 53921 AAGAGCAACCAGAAGAACATCGGCGTCATC 53950 ||| |||||| || || ||||| |||| Sbjct 14276 AAGTCGAACCAGCAGCACCTCGGCACCATC 14247 Score = 176 bits (194), Expect = 5e-39 Identities = 315/454 (69%), Gaps = 7/454 (2%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||||| | |||||||| |||||||| || ||||| || || || || ||||||| | Sbjct 13745 GGCCTCAGGAACTCCCTCCTCGTGGCACCCATGCCTACAGCATCCACCTCTCAGATTCTC 13686 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 |||||||||||| |||||||||||||| ||||||||||| || || | || || Sbjct 13685 GGCAACAACGAGTGCTTCGAGCCGTACACCTCCAACATCTACACACGTCGCATTCTTGCG 13626 Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGG 55657 || || || | | ||||| |||||||| || |||||| | || | |||| Sbjct 13625 GGCGACTTCACCGTCGTCAACGAGCACCTCCTCCGCGACCTGATGGAGCGAGGCTTGTGG 13566 Query 55658 AAC-CCGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGGA--- 55713 |||| | |||| | | ||| || || ||||| ||||| | || Sbjct 13565 TCGGCCGCCCTT-AAGAACAAACTCGTGGCCCACAACGGCTCCGTGCAGAACATCGACGA 13507 Query 55714 GATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTC- 55772 ||| ||| |||||| || | ||| ||| |||||||||||||| ||| | ||| Sbjct 13506 GATCCCTGATGACCTCAAGAAGCTGTACAAGACTGTGTGGGAGATTCCGCAGC-GCGTCG 13448 Query 55773 TGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCT 55832 | || |||||| || || || ||| |||||||||||| |||||| || ||||||| Sbjct 13447 TCATCGACATGGCCGCCGACCGCTCTGCATACATCGACCAGAGCCAGTCGCTCAACATCT 13388 Query 55833 TCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGG 55892 ||||| | ||||| | |||||| | | ||||||||||| |||| ||| |||| Sbjct 13387 ACATGGGAGAGCCTTCCTTCGCCAAGCTCACTTCGATGCACTTCTACGCTTGGCGCAAGG 13328 Query 55893 GACTCAAGACGGGTATGTACTATCTGCGGACCCG 55926 | |||||||| || |||||||| || || || || Sbjct 13327 GCCTCAAGACCGGCATGTACTACCTTCGTACGCG 13294 >seq23003 Length=12893 Score = 217 bits (240), Expect = 2e-51 Identities = 476/692 (69%), Gaps = 26/692 (4%) Strand=Plus/Plus Query 53272 CTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAG 53331 ||| ||||||||||| || || || |||||||| || ||| || || ||| | ||| Sbjct 748 CTTCACGCACGCCACTCCTACTCTCTTCAACGCGGGCACGCCTCGTCCGCAGCTCTCGTC 807 Query 53332 CTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGA 53391 ||||||||| | |||||||||| ||||| ||||| ||||||||||| ||||||||| | Sbjct 808 GTGCTTCCTGCTCACGATGAAGGAGGACTCCATCGAGGGCATCTACGACACGCTCAAGCA 867 Query 53392 GTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGC--TCGAACG--TCC 53447 ||| || | ||||||||||| | ||||| || ||| | ||| || | || ||| Sbjct 868 GTGCGCTCTCATCTCCAAGTCCGCAGGTGGCATTGGTGT----TGCCGTCCACCGCATCC 923 Query 53448 G---TGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTA 53504 | | ||||| | || ||| || || ||||| || | ||| || | || | Sbjct 924 GCGCTTCGAAC-TCCTAC--ATCCGCGGCACCAACGGAACATCCAACGGACTCATCCCCA 980 Query 53505 TGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGG 53564 ||||||| || | |||| | || || || ||||| | ||||| ||||| |||||||||| Sbjct 981 TGCTCCGTGTTTACAACGATACCGCTCGCTACGTTGATCAGGGCGGTGGCAAGCGCAAGG 1040 Query 53565 GGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGC 53624 | ||||||| ||||| || |||||||||||||||||||| | || || || ||||| Sbjct 1041 GAGCGTTCGCGATCTATCTGGAGCCGTGGCACGCCGACATCTTCGATTTCCTTGAGCTCA 1100 Query 53625 GTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTT-TACAGCTCTGTGGAT 53682 ||| || || | || |||| || ||| ||||| || || || || |||||| | Sbjct 1101 AGAAGAACCATGGCAAGGAGGAGAACCG-TGCTCGTGATCTCTTCTATGGC-CTGTGGGT 1158 Query 53683 TCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAA 53742 || ||||| |||||| | || ||| | | || |||| || | ||||| || Sbjct 1159 GCCCGACCTGTTCATGAAGCGCGTCGAGGCCGGAGGCGACTGGTCGCTCTTCTGCCCCAA 1218 Query 53743 CGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACG- 53800 ||| || |||||| | ||| || || || ||||| | |||| ||| || || Sbjct 1219 CGAAGCGCCAGGCCTCTTCGAGTG-CTGGGGCGACGAGTTCGAGGAGAAGTA-CGTGCGT 1276 Query 53801 TACGCAGTTC-AGGGCCGCTACAAGAAG-AAGGTCAAGGCGCGTGAGGTATGGGATGCAA 53858 |||| || | | |||||| | | | |||||||| | ||| | ||| | | Sbjct 1277 TACG-AGAACGAAGGCCGC-GCTCGCCGTGTCGTCAAGGCCCAGGAGCTGTGGTTCTCCA 1334 Query 53859 TCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACG 53918 | ||| || ||| | ||||| || ||||| ||||| ||| ||||||||| ||| | Sbjct 1335 TTCTCGAGTCGCAGATCGAGACCGGCACGCCTTACATCCTCTATAAGGATTCGTGCAATG 1394 Query 53919 AGAAGAGCAACCAGAAGAACATCGGCGTCATC 53950 ||| |||||| || || | ||| |||| Sbjct 1395 CCAAGTCGAACCAGCAGCACCTTGGCACCATC 1426 Score = 168 bits (186), Expect = 7e-37 Identities = 308/445 (69%), Gaps = 7/445 (2%) Strand=Plus/Plus Query 55487 AACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAAC 55546 |||||||| ||||||||||| ||||| || || || || | ||||| | ||||||||| Sbjct 1937 AACTCCCTCCTCGTGGCGCCCATGCCTACGGCATCCACCTCACAGATTCTTGGCAACAAC 1996 Query 55547 GAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTT 55606 ||| |||||||||||||| |||| |||||| || || | || || || || || Sbjct 1997 GAGTGCTTCGAGCCGTACACCTCCAATATCTACACACGTCGCATTCTTGCCGGCGACTTC 2056 Query 55607 GTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAAC-CCGCA 55665 | | ||||| |||||||| || |||||| | || | |||| |||| Sbjct 2057 ACCGTCGTCAACGAGCACCTCCTCCGCGACCTGATGGAGCGAGGCTTGTGGTCGGCCGCC 2116 Query 55666 GATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGGA---GATTCCTCT 55722 |||||| | | || || || || || ||||| | || ||| || Sbjct 2117 C-TCAAGAACAAACTCGTCGCTCACAACGGCTCAGTGCAGAACATCGACGAGATCCCCGA 2175 Query 55723 GCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGT-CTGATTGACA 55781 ||||||| || | ||| ||| |||||||||||||| ||| | || | || |||| Sbjct 2176 TGATCTCAAGAAGCTGTACAAGACTGTGTGGGAGATTCCGCAG-CGCGTAGTCATCGACA 2234 Query 55782 TGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGA 55841 || ||| ||||| |||||||||||| ||| |||||| || ||||||| ||||| Sbjct 2235 TGGCTGCCGATCGCTCTGCGTACATCGATCAGAGCCAGTCCCTCAACATCTACATGGGCG 2294 Query 55842 ATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGA 55901 | ||||| | |||||| | | ||||||||||| |||| ||| ||||| ||||||| Sbjct 2295 AGCCTTCCTTCGCCAAGCTCACTTCGATGCACTTCTACGCTTGGCGCAAGGGCCTCAAGA 2354 Query 55902 CGGGTATGTACTATCTGCGGACCCG 55926 | || |||||||| || || || || Sbjct 2355 CTGGCATGTACTACCTCCGTACGCG 2379 >seq23741 Length=113318 Score = 131 bits (144), Expect = 2e-25 Identities = 208/296 (70%), Gaps = 12/296 (4%) Strand=Plus/Minus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || ||||| | ||| || | || ||||| || | ||| |||||||| || || |||||| Sbjct 78303 CCCTCATCGCGGCTGATGAGCTCGTTCGAGAAGGCAAGACCAGGCATGAGGCCGCGCTTC 78244 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||| |||||||| |||||||| ||| |||||||||||| |||||| || ||| Sbjct 78243 TTGAGCCAGAAGATGGCGCAGAAGGAGCCAGAGAAGAAGATGCCCTCGACAGCGGCGAAG 78184 Query 74889 GCGACAAGGCGTTGCGCGAACGGTGCATCG--GAAGTC-------ATCCAAGTCTGAGCC 74939 |||| || || | ||| || ||| ||| | ||| ||||| || | ||| Sbjct 78183 CCGACCAGACGCTCCGC-AAAGGT--CTCGACGCCGTCCTTGGCAATCCACTTCAGGGCC 78127 Query 74940 CATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTC 74999 || || || || ||||||| | || || ||||| || |||| |||| ||||| Sbjct 78126 CACTCCGCCTTCTTCTTGACCGAGGCCACCGTCTCGATGGCACGGAACAGGCGATCCTTC 78067 Query 75000 TCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAAT 75055 || | | ||||| ||| | |||| |||| || |||||| | ||||| ||||| Sbjct 78066 TCCACCGCGTCCTTTACGTACGTGTCGATCAGGAGCGAGTACATTTCCGAGTGAAT 78011 >seq19224 Length=6113 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 152077 GTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAA-TTCTG 152135 ||||| |||||||||| || | |||||| | |||||||| || | |||| || || Sbjct 670 GTTCCGAACTGTCCAGCAGGATAGAGGAGAGGCACGTTGTTGGAACC-AGGAAAGTTTTG 612 Query 152136 AGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTC 152195 ||||| | ||||| ||| | || ||| ||||| ||||| || || || |||||||| Sbjct 611 AGCCATGTGAACAATAGTGGCATGGAGAGAGGCTTCGCCGTGATGGTAGGCTGTCTGCTC 552 Query 152196 CGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC 152231 |||| ||| || | || ||||||||||||||| || Sbjct 551 AGCGACGTAGCCGGACAGCTGCGCCACCTTCATTTC 516 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 117353 GTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGA 117412 || ||||| |||||| || | | ||| || |||||||| || |||||||||| Sbjct 670 GTTCCGAACTGTCCAGCAGGATAGAGGAGAGGCACGTTGTTGGAACCAGGAAAGTTTTGA 611 Query 117413 GCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCC 117472 |||| || ||||| || | ||||| || || || || || || || |||||||| Sbjct 610 GCCATGTGAACAATAGTGGCATGGAGAGAGGCTTCGCCGTGATGGTAGGCTGTCTGCTCA 551 Query 117473 GCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTC 117507 || |||||||| | |||||| ||||||||||| || Sbjct 550 GCGACGTAGCCGGACAGCTGCGCCACCTTCATTTC 516 >seq22186 Length=29048 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 117389 TTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCA 117448 ||||||| || ||||||||| |||| || ||||| || | ||||| |||||| Sbjct 26493 TTGTTGGAACCGGGAAAGTTTTGCGCCATGTGAACAATAGTGGCGTGGAGAGAGGCCTCA 26434 Query 117449 CCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTC 117507 || || || || || ||||| || || |||||||| | |||||||||||||||||| || Sbjct 26433 CCGTGATGGTAGGCTGTCTGTTCAGCTACGTAGCCGGACAGCTGAGCCACCTTCATTTC 26375 >seq21891 Length=78955 Score = 82.4 bits (90), Expect = 8e-11 Identities = 189/281 (67%), Gaps = 9/281 (3%) Strand=Plus/Plus Query 117308 AAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCA 117367 |||||||| | || ||| || |||||||| ||||| |||||| |||| || ||| Sbjct 49333 AAAATGTACCTAGCGCTAGCTGCATCCTTACCACCTTGAAGACGGCTACCAAAGCTACCA 49392 Query 117368 CTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATC 117427 || | | || ||| | |||||| | ||| || ||| | || |||| |||||| Sbjct 49393 GCGGGATAGAGGACGTTGATGTTGTTCGAGCCGACGAAGCTATGCGCCATACCGACAATA 49452 Query 117428 GTACCTTG----GAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCC 117483 || ||| ||| ||| |||||||||||| || |||| || | ||||||||| Sbjct 49453 GT--CTTATTCAGAGACTC--CTCACCATGGTGGTATGCCGAGTGTAGAGACACGTAGCC 49508 Query 117484 CGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCAC 117543 ||||| ||||| || || | | | |||||| ||| ||| | || | | Sbjct 49509 GCTAAGCTGGGCCACTCGGATCTCCTCCTTGATGTTCTTGCTGAAGCAAGTGTACAAGAT 49568 Query 117544 CTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGA 117584 |||||| |||| ||||| ||||| ||| | | |||| ||| Sbjct 49569 CTTGCGTTGACCAGGCTTAAGACCGTCCACGA-GTGACGGA 49608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547051164860400