Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20royreba_20[genbank_20GCA_5F000826365.1_202015-01-07] 24,098 sequences; 79,544,075 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq23826 122 6e-23 seq23603 113 3e-20 seq18924 107 1e-18 seq23480 104 2e-17 seq19772 98.7 7e-16 seq22955 95.1 8e-15 seq22211 89.7 3e-13 seq18730 89.7 3e-13 >seq23826 Length=10614 Score = 122 bits (134), Expect = 6e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || |||||||| ||||| || || ||| || Sbjct 8749 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACGATCACCCTCGAGGTCGAGTCCTCG 8808 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | || ||||| || ||||| || ||| | || || || || Sbjct 8809 GACACTATTGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAG 8868 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || || || || || || |||| || || | | ||| |||||| Sbjct 8869 CAGCGCCTCATCTTCGCGGGTAAGCAGCTCGAGGACGGCCGTACCCTTGCCGACTACAAC 8928 Query 23791 ATACAAAAAGAGTCCAC 23807 ||||| || |||||||| Sbjct 8929 ATACAGAAGGAGTCCAC 8945 >seq23603 Length=18425 Score = 113 bits (124), Expect = 3e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| ||||| || || ||| | Sbjct 482 ATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCCTCT 423 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||||| || ||||| || ||| | || || || || Sbjct 422 GACACGATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAG 363 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || |||||||| || || || |||| ||||| | | || |||||| Sbjct 362 CAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTCGCTGACTACAAC 303 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 302 ATCCAGAAGGAGTCCAC 286 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || || |||||||| || || ||| | Sbjct 254 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATTACTCTCGAGGTCGAGTCCTCT 195 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||||| || ||||| || ||| | || || || || Sbjct 194 GACACGATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAG 135 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || || || || || || |||| ||||| | | ||| |||||| Sbjct 134 CAGCGCCTCATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTCGCCGACTACAAC 75 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 74 ATCCAGAAGGAGTCTAC 58 >seq18924 Length=24070 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||||||||| || || ||| | Sbjct 18214 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCC 18155 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||||| || ||||| ||||| | || || || || Sbjct 18154 GACACGATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAAGGCATCCCTCCCGACCAG 18095 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || || || || || ||||||| ||||| | | ||| |||||| Sbjct 18094 CAGCGCCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGCACCCTCGCCGACTACAAC 18035 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 18034 ATCCAGAAGGAGTCAAC 18018 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || || || |||||||| || || | Sbjct 17986 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATTACGCTCGAAGTCGAGTCGAGC 17927 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | || ||||| || ||||| || ||| | || || || || Sbjct 17926 GATACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCAG 17867 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || || || || || || |||| || || | | ||| |||||| Sbjct 17866 CAGCGCCTCATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGTACCCTGGCCGACTACAAC 17807 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 17806 ATCCAGAAGGAGTCGAC 17790 >seq23480 Length=26370 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| |||||||| || || | Sbjct 12780 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAAGTCGAGTCGAGC 12721 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | || || || || ||||| || || | || || || || Sbjct 12720 GATACCATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 12661 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || ||||| || || || || |||| |||||| | | ||| |||||| Sbjct 12660 CAGCGTCTTATCTTCGCCGGTAAGCAGCTTGAGGACGGCCGCACTCTCGCCGACTACAAC 12601 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 12600 ATCCAGAAGGAGTCGAC 12584 >seq19772 Length=5961 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | ||||| || || || ||||||||||| || || | Sbjct 1550 ATGCAGATCTTCGTCAAGACCTTGACGGGTAAGACCATTACTCTCGAAGTCGAGTCGAGC 1491 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || || || ||||| || || | || || || || Sbjct 1490 GACACGATCGAAAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 1431 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || ||||| || || ||||||| ||||| | | ||| |||||| Sbjct 1430 CAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAAGACGGCCGCACCCTGGCCGACTACAAC 1371 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| || || || Sbjct 1370 ATTCAAAAGGAATCAAC 1354 >seq22955 Length=9686 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || |||||||| |||||||| || || | Sbjct 8152 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACGATCACCCTCGAAGTCGAGTCGAGC 8093 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | || || || || ||||| || || | || || || || Sbjct 8092 GATACCATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 8033 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || || || || |||| || || | | ||| |||||| Sbjct 8032 CAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGTACCCTGGCCGACTACAAC 7973 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 7972 ATCCAGAAGGAGTCGAC 7956 >seq22211 Length=15201 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || || || || || ||||||||||| || || | Sbjct 4203 ATGCAGATCTTCGTCAAGACTTTGACCGGTAAGACCATTACTCTCGAAGTCGAGTCGAGC 4262 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | || || || ||| ||||| || ||| | || || || || Sbjct 4263 GATACCATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAG 4322 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || |||||||| || || || |||| || || | | ||| |||||| Sbjct 4323 CAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACGCTGGCCGACTACAAC 4382 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 4383 ATTCAAAAGGAGTCAAC 4399 >seq18730 Length=7279 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || || || |||||||| || || | Sbjct 124 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATTACGCTCGAAGTCGAGTCGAGC 183 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | || ||||| || ||||| || ||| | || || || || Sbjct 184 GATACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCAG 243 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || || || || || || |||| ||||| | | || |||||| Sbjct 244 CAGCGCCTCATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTCGCTGACTACAAC 303 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 304 ATCCAGAAGGAGTCGAC 320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337910328481784