Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq19 192 6e-44 >seq19 Length=879724 Score = 192 bits (212), Expect = 6e-44 Identities = 589/895 (66%), Gaps = 27/895 (3%) Strand=Plus/Minus Query 15884 TTATCTTGTTTAGAAG-CAACACCCA--TTCTTTGGTAATCACTAACGCGTTTTTCGAAG 15940 ||||||| |||| | |||||||| || |||| ||||||| || ||||| || ||| Sbjct 584163 TTATCTTCCGTAGAGGTCAACACCCCGCTTTTTTGATAATCACCCACACGTTTCTCAAAG 584104 Query 15941 AAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTAGTAGCTGAA 16000 || || ||||| || | | || || | |||||||||||||| ||||| || || | Sbjct 584103 AAATTGGTTTTGCCTTGCAGGGAGATCATCTCCATAAAATCAAACGGATTGGTGGCATGA 584044 Query 16001 AATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGA 16060 |||| || | || ||||||||| | |||| ||||| ||||| || ||||| || Sbjct 584043 TATATTTTGGTATAACCCAGTTCCTGCAGCCATCTGTCTGCAACAAACTCAATATACTGT 583984 Query 16061 CACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGT 16120 |||| | | ||| || || || || ||||| | || | ||| | ||||| Sbjct 583983 GACATCAGTTTTGCATTCATCCCGATCAGGGCAACCGGCAAGGCATCTGTAATAAATTCC 583924 Query 16121 TGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACG--GTGTAT 16178 | ||| || | ||||| || || || || || || || | | | || ||| Sbjct 583923 TTTTCGATTTCTACCGCGTCGCGGATAAT-TCCATGAA-CGACTTCCTGGCTCAGTTTAT 583866 Query 16179 GGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGA 16238 || || |||| | | || || || || || ||||| | || || |||||| | Sbjct 583865 TTTTGAGCATTTTATAAAGCAGGCAGGCAAATTCACAATGCATCCCCTCATCTCTGGAAA 583806 Query 16239 TAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCG 16298 | | || || ||| |||| ||||||||| |||| ||| || |||||||| |||| Sbjct 583805 TCAACTCATTACTAAAGGTTAGCCCTGGCATCAGGCCTCTTTTTTTCAACCAGAAGATCG 583746 Query 16299 CAGCAAATGACCCCGAA-AAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCC 16357 | || | | |||| ||||| || || || || | || ||||| | || ||||| Sbjct 583745 AA-CAGAAGCTCCCGCTGAAGAAAATGCCTTCCACTGCGGCGAAAGCCACCAAACGTTCG 583687 Query 16358 GCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATA 16417 || | | | | | | ||||| | | ||||||| ||||||| |||| | Sbjct 583686 GCAAAATTTCCGCCCTCA------ATCCAGCGCAATGCCCATTCTGCTTTTTTCTTTACA 583633 Query 16418 CAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATAC 16477 ||| | ||| |||| ||| | |||| | |||||||| | | ||| | ||||| Sbjct 583632 CAAGGAACCGTCTCTACGGCATGGAACAGCCTGTCTTTTTCTTCAGGATCTTTAATATAG 583573 Query 16478 GTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCA 16537 ||||| ||||| | || |||| ||||| ||||| || || ||||| || ||| Sbjct 583572 GTATCGATCAGCAGCGCATAGGTTTCAGAGTGGATGTTTTCCATCATGATCTGGAAGCCA 583513 Query 16538 TAGAAGCATCGAGCCTCCGCTATTTGTACTTC-CACGTAAAATCGTTCC--GCCAGGTTC 16594 || || || || || || | | |||||||| | | | || |||| || ||||| Sbjct 583512 TAAAAACAACGGGCTTCGGGAAGCTGTACTTCGCTCATGAA---GTTCACTGCAAGGTTT 583456 Query 16595 TCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTT 16654 ||||| || || |||||||||||||||||||| || | ||| || |||||||| Sbjct 583455 TCATTTACAATGCCGTCACTTGCAGCAAAAAAAGCAAGTATATGAGAAATGAAATGACGC 583396 Query 16655 TCGTCAG-ATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGG 16713 ||| | | || |||| | | ||| | || || | || | || | |||||| | Sbjct 583395 TCGCCTGTATTTAAG-TTGTCCCAGTGCTTCTGGTCATCAGAAAGGTCAATTTCTTCAGC 583337 Query 16714 CGTCCAAAAGCTAGC--CACTGCCTTTTTATACATTTTCCAAATATCATTGTATT 16766 ||||| || || || |||| ||| |||||||||| ||| || ||| ||||| Sbjct 583336 GGTCCAGAAACTTGCTTCACT--CTTCTTATACATTTCCCAGATTTCAGGGTATT 583284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511348382793640