Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq19 284 1e-71 >seq19 Length=879724 Score = 284 bits (314), Expect = 1e-71 Identities = 806/1223 (66%), Gaps = 24/1223 (2%) Strand=Plus/Minus Query 53441 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 53500 ||| || ||||||| ||||| || || | ||||||| | || ||| | || ||| Sbjct 585919 GCAGCGAAATAAATCGTTTCAAAAATTTCTTTATTTAAAATTTTTGCCCCTTCACTTTCA 585860 Query 53501 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 53560 ||||| || | || ||||| || ||||| ||||| || ||||| | ||| | ||| Sbjct 585859 AATGGTAAACGCATCAGGATAAAAGCATCTGCCAATCCCTGTACACCTAAACCAACTGGT 585800 Query 53561 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 53620 || || | | | || || ||| |||||| | |||||||||||| ||| |||||| Sbjct 585799 CTGTGGCGCATGTTGGAATTTTTAGCTTCCTCTACCGGATAATAATTATGATCAATAATT 585740 Query 53621 TTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGT 53680 ||||| ||||| | | | | ||||| | | ||| || |||||| | | Sbjct 585739 TTATTCAGGTTCAGGGTAGCCTGATAGGTTACATCATATAATTTCTGATGATCAAACTCT 585680 Query 53681 CCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCAT-- 53738 || | || ||||| | ||| || | || ||||| ||||| || || ||||| | Sbjct 585679 CCGTTGATGACAAATCTTGGCAAAGCCAACGAGGCCAGGTTACATACAGCAACCTCGTCT 585620 Query 53739 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 53798 | | | | ||| | ||| || || || ||||| || || |||||||||||||||| Sbjct 585619 TTGGAA--GTATACTCTATAATTTCTGTACAAAGGTTGGAACTTTTGATGGTTCCTAAAT 585562 Query 53799 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTT 53858 |||| || || || |||| ||||| ||||| | | | || || || |||| Sbjct 585561 TTTGCTGGTTGGATTTGCTGTTTGCTGCATCTTTATACAACAGATAAGGGGTTCCGGTTT 585502 Query 53859 CAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTT----G 53914 ||||||| || || | ||| || ||| | | | || |||| || | ||| | Sbjct 585501 CAATCTGTGAATCCAGAATGGCAAACCAAAGCTCTTGTGC-TTTA--ATGGTTTTACGGG 585445 Query 53915 TATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTG 53974 | || || || ||||||| | ||| || || || || | || || || | Sbjct 585444 CACGTCCTT-CTTTTTCGTAACGCTCATATAAAGCATCGAATTCTGCACCA-AAGCAATC 585387 Query 53975 T-CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCG 54033 | ||| ||| || ||||| ||||| | || ||| ||||||| || | || | Sbjct 585386 TGCCAGTCCCGGGGCTTCATGAGGACAGAATAAACTCCAGTCTCCGTTTTCTTCTACCCT 585327 Query 54034 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCT 54092 | |||| || || ||| | |||||| || ||| |||| |||||||| | | |||| | Sbjct 585326 TCTCATGAACAGGTCACATACCCAAAGGGC-ATAGAATAAATCTCTGGCACGAAGTTCTT 585268 Query 54093 CGTTTCCTGTATTCTTTTTA---AGATCGAGGAACGCCATAATATCAGAATGCCACGGTT 54149 | || || || |||||| || || || || || | ||| | |||||| || | Sbjct 585267 CTTTACC---ATGGTTTTTACGCAGGTCCAGAAAACTCAGCACATCTGCATGCCATGGCT 585211 Query 54150 CCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGG 54209 ||| ||| |||| | | | || ||||| ||| ||||| || | || | |||| Sbjct 585210 CCAGGTAAATGGCAAAAGCACCTTTACGTTTACCTCCACCCTGGTCCACATAACGGGCGG 585151 Query 54210 TGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGA 54269 | | ||| | ||| ||||||| || | ||| |||||| | || || || || | Sbjct 585150 TATCGTTAAATACTTTCAACATAGGTACAATCCCATTGCTGGTCCCGTTTGTTCCACCAA 585091 Query 54270 TATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAG 54329 |||| ||| ||||||| || ||| || || ||| || || ||||| ||| | Sbjct 585090 TATAAGATCCCGTGGCACGGATGTTATGGATGCTTAAACCAATACCACCTGCGCTTTGTG 585031 Query 54330 AGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGT 54389 | ||| ||| | ||||||| ||||| || || || || ||||| || ||| |||| Sbjct 585030 AAATTTTAGCGGTTTGTTTTAAAGTATCGTAAATTCCTTCAATACTGTCGTCCTGCATGG 584971 Query 54390 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 54449 | |||| ||| ||| ||||||||| | | || | ||||||||||| || || | Sbjct 584970 TCAGTAAAAAGCAGGAAGACATTTGAGGTTTAGGGGTAGCTGCATTAAATAAAGTTGGGG 584911 Query 54450 AAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATAT 54509 || ||||||||||| ||| | || || ||||| | || || || |||| Sbjct 584910 TTGCATGCGTAAACCAGCGCTCACTCATCAGGTTATACGTTGCAATCGCACTTTCAATAT 584851 Query 54510 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 54569 | || ||||| ||||| || |||||||| |||| || || || | ||| || || | Sbjct 584850 CTTCTTTGTGAATCCCTACGGCAACACGCATAAACAAATGTTGCGGGCGTTCTACAAT-T 584792 Query 54570 TGTTGTT-TATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 54628 ||| || ||||||||||| ||||||||||| | |||||||| |||||||| | | || Sbjct 584791 TGTCCTTCTATTTTCAGCAGATAGGATTTTTCAAGGGTTTTAAACCCAAAATAATCGAAT 584732 Query 54629 GAAAAGTCTCGTTCGTAAATAAT 54651 ||| || | || |||||||| Sbjct 584731 CCAAAATCCCTGTCATAAATAAT 584709 Score = 224 bits (248), Expect = 1e-53 Identities = 580/877 (66%), Gaps = 9/877 (1%) Strand=Plus/Minus Query 23842 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATAT 23901 ||||||| || |||||||||||||| || || ||||| ||||| |||| | || || Sbjct 584135 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 584076 Query 23902 TTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAA 23961 | ||||| ||||| | |||||||| ||| ||| ||| | || | |||| ||| | Sbjct 584075 TCTCCATAAAATCAAACGGATTGGTGGCATGATATATTTTGGTATAACCCAGTTCCTGCA 584016 Query 23962 TCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAA 24021 | |||| ||||| |||||||| ||||| | ||||| || |||||| || || | Sbjct 584015 GCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATCA 583956 Query 24022 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 24081 | ||| || | || | |||| |||||| | ||| || |||||||| |||| Sbjct 583955 GGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGATAA 583896 Query 24082 TAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 24141 | || ||| | ||| || || | |||| | | || || || | Sbjct 583895 TTCCATGAACGACTTCCTGGCTCAGTTTATTTTTGAGCATTTTATAAAGCAGGCAGGCAA 583836 Query 24142 AATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 24201 | || || || | ||||| ||||| ||| || || || ||| || || || |||| Sbjct 583835 ATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCCTGGCA 583776 Query 24202 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA-AAGAAAATTCCT 24260 | ||||| | ||||| | ||| || || || || | | ||| | |||||||| ||| Sbjct 583775 TCAGGCCTCTTTTTTTCAACCAGAAGATCGAA-CAGAAGCTCCCGCTGAAGAAAATGCCT 583717 Query 24261 TCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCACTTT 24320 || ||||| || || || | | | ||| || || ||| ||| ||||| Sbjct 583716 TCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAAATTTCCGCCCTCA---ATCCAGCGC 583660 Query 24321 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAG 24380 ||||| || || || || ||||||||||| | ||||||| |||| || || | Sbjct 583659 AATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGAACAGCCTG 583600 Query 24381 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 24440 | |||||| | | |||||||| ||| ||||| |||| || ||| |||| || || Sbjct 583599 TCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTTTCAGAGTGG 583540 Query 24441 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 |||||||| || || || || || || ||||| | || |||| || ||||||||| Sbjct 583539 ATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGCTGTACTTCG 583480 Query 24501 ATACAAAATCGTT--CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 24558 | || | ||| |||| | |||||||| || || |||||||| || |||||||| | Sbjct 583479 CT-CATGA-AGTTCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCAAAAAAAG 583422 Query 24559 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATAT 24618 | | || ||| || |||| ||| ||| ||| || | ||| | || | Sbjct 583421 CAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCCAGTGCTTCTGGT 583362 Query 24619 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 24678 | | ||| | || | |||||| | ||||| || ||| || ||| |||||||| | Sbjct 583361 CATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCACTCTTCTTATACATTT 583302 Query 24679 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 |||||| ||| | |||| ||| || |||| |||||| Sbjct 583301 CCCAGATTTCAGGGTATTTAATAGGCAAAAGAACAAA 583265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593644957962960