Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq250 183 4e-41 seq1432 168 8e-37 seq5011 158 1e-33 >seq250 Length=59172 Score = 183 bits (202), Expect = 4e-41 Identities = 222/300 (74%), Gaps = 2/300 (1%) Strand=Plus/Plus Query 145690 TCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTC-CCCGGGCTC 145748 || ||||||||| ||| | |||||||| |||||| || | |||||| ||| || | Sbjct 46320 TCAACGTGGTTGGAGTACAGATGCGCGTCGCCCAGGGTATGCACGAAGTCGCCCACGCCC 46379 Query 145749 GAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGG 145808 || || ||| || || ||||||| ||| ||||| | ||||||||| |||||||| || Sbjct 46380 -AGCCCGGTGGCCTGCGCCACCATGTGGGTGAGCAGTGCGTAGCTGGCGATGTTGAACGG 46438 Query 145809 CACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGC 145868 ||| ||||| ||||| || ||||||||||| ||||||| ||||| ||| || | Sbjct 46439 CACGCCCAGGAAGATGTCGCCGCTGCGCTGGTACAACTGGCAGCTGAGCTTGCCGTCCAC 46498 Query 145869 CACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGG 145928 ||||||||||||| ||||| |||||||||| || ||||| | ||| || || Sbjct 46499 CACGTAGAACTGGAACAGGTTGTGGCAGGGCATCAACGCCATCTGCGACAGCTCGCCCAC 46558 Query 145929 GTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAG 145988 |||||||||| ||| || |||| || |||||||| | |||||||||| | | ||| Sbjct 46559 GTTCCAGGCGCTGACCACCAGCCGCCGCGAATCGGGGTTGCGCTTGATCTCCTCCACCAG 46618 >seq1432 Length=12607 Score = 168 bits (186), Expect = 8e-37 Identities = 240/332 (72%), Gaps = 8/332 (2%) Strand=Plus/Minus Query 145690 TCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTG--GATGAAGTCCCCGGGCT 145747 || ||||| ||| ||||||||| ||| || | ||| || |||||| ||||||| Sbjct 8994 TCGACGTGATTGTCGTAGACGTGGCAGTCTCC--GCCCGTCCAGACGAAGTCTCCGGGCT 8937 Query 145748 CGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGG 145807 |||||||| | ||||||| ||| |||||||| || |||| ||| |||||||| | Sbjct 8936 CGAGGCCCACCTGCTGGGCGATCATCATGGTCAGCAAGGCGTAGGAGGCGATGTTGAACG 8877 Query 145808 GCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCG 145867 |||| || || |||||| | |||||| |||||||| || ||||||| ||| | | Sbjct 8876 GCACACCGAGGAACATGTCGGCGCTGCGCTGATACAGCTGACACGAGAGCTTGCCGTCGG 8817 Query 145868 CCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCG 145927 | |||||||||||| |||| ||| ||||||| || |||||| | || | ||| |||| Sbjct 8816 CGACGTAGAACTGGAACAGCGCGTGACAGGGCGCGAGCGCCATGTCCGGGATGTCGGCCG 8757 Query 145928 GGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGG-GTTCCTCTTGATCTCCCCTATC 145986 |||||||||| | | || ||||| | | ||||| | | || ||||| | | ||| Sbjct 8756 GGTTCCAGGCAGACACGATGAGCCGACGGGAGTCGGGCGAGCGTC-GGATCTGCTCGATC 8698 Query 145987 AGGTCCCTGAGCTGGTCCACGCCCTGCCCCCG 146018 | ||| ||||||||| | | || |||||| Sbjct 8697 ACGTCGGAGAGCTGGTCGATG--CTCCCCCCG 8668 >seq5011 Length=2423 Score = 158 bits (174), Expect = 1e-33 Identities = 186/252 (74%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 145688 GCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCT 145747 |||| | |||||| |||| ||||| || ||||| ||| | ||| || || |||| Sbjct 368 GCTCGAAATGGTTGGCATAGAGATGCGCATCGCCCAGCGTGTGAACGAAATCACCCGGCT 427 Query 145748 CGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGG 145807 || ||||||| || || |||||| ||||||||||| ||| || || ||||| | Sbjct 428 GCAGACCCGTGACCTGCGCCACCATGAGGGTCAGCAGGGCATAGGATGCGATATTGAACG 487 Query 145808 GCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCG 145867 |||| || || || || | ||||||||||| ||||||||||| |||| ||| | | Sbjct 488 GCACGCCGAGAAAGATATCGGCGGAGCGCTGGTAGAGCTGGCAGGAAAGCTTTCCGTCGG 547 Query 145868 CCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCG 145927 |||||||||||||| ||||| ||||||||||||||| ||||| | | | ||||| Sbjct 548 CCACGTAGAACTGGAACAGGCAGTGGCAGGGCGGCAGCGCCATTTCATCGACGAGCGCCG 607 Query 145928 GGTTCCAGGCGG 145939 | ||||| |||| Sbjct 608 GATTCCATGCGG 619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590000628461080