Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq504 123 2e-23 seq1971 104 2e-17 seq1210 91.5 1e-13 seq426 91.5 1e-13 seq374 91.5 1e-13 seq396 84.2 2e-11 >seq504 Length=56252 Score = 123 bits (136), Expect = 2e-23 Identities = 235/342 (69%), Gaps = 17/342 (5%) Strand=Plus/Plus Query 23614 ACCCCAATGATGCCGCAGCCCAGCCGGCCGCCAGAATTGCCCGTGGTCTTGCTGAGCGGG 23673 || |||||||| ||||| | || || |||| | | || |||||||||||| | Sbjct 35639 ACGCCAATGATACCGCAAGCGAGACGAGCGCCGGCGTGACCGGTGGTCTTGCTGTCGGAC 35698 Query 23674 TGCTCGCCGAGGCCCAGGTCATCGCGGTCCGTGTGCACGACCAGGCTGCGGCCCA--ATA 23731 || | ||||| || ||||| ||| ||| | ||| ||||||| | |||||| | ||| Sbjct 35699 TGGCCTCCGAGACCGAGGTCGTCGGCGTCGGCGTGGACGACCATGGAGCGGCCGATGATA 35758 Query 23732 TACTCAACGGCCCAAACAGGGTTATCACGTTGTC-----GCTCATGTGTATGGCCGTGAG 23786 | | || ||||| ||||| || | ||||| || || | | || || Sbjct 35759 GAGTTCTCG--CCAAAGAGGGTGATGAGCTTGTCAGAGAGCGAGCCGGTGTCGGCGGCAG 35816 Query 23787 TGCGGTGCAGCCCGCAGAGCGCACGTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGCGTC 23846 || ||| | || | ||| |||||||| ||| |||||||| || | ||||| Sbjct 35817 AGCCGTG--GGCCTC-GAG-----GTTGCCCAAGTCTCCGACGTGGCGGACGTCGGCGGT 35868 Query 23847 GGGCGCGCCGTGTCTCTGGCGGGTGGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTT 23906 ||| || ||||| || || | |||||| ||||| |||| |||||| |||||||||| Sbjct 35869 GGGGGCTCCGTGCTCCTTGCCGAAGGGGTTGAAGTGGGCGCCGGCGGACATGCAGCCGTT 35928 Query 23907 GCTGGTGTCGCCGAATTCGTGCACGTGAAAACCGTGCAGCCC 23948 | |||||||||| || | ||| ||||| || |||||||| || Sbjct 35929 GGTGGTGTCGCCAAACTGGTGGACGTGGAATCCGTGCAGTCC 35970 >seq1971 Length=9940 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| || | ||||||||||| || ||||| || |||| Sbjct 4369 CCTCCACGGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAG 4310 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||| ||||| || || || |||| || | ||| ||||| ||| Sbjct 4309 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGTTGGTCGGGGGGG 4250 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | ||| || || | ||| Sbjct 4249 ATGCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTCTCGATGGTGTCCGAGCCCTCGACC 4190 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||||||||| | || ||||| || || ||||| Sbjct 4189 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 4143 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | || | |||||||||||| || ||||| ||||| | Sbjct 4597 CCTCCACGGAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 4538 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||| || || ||||| ||| | || || | ||||||||| ||| Sbjct 4537 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGG 4478 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | ||| || || | ||| Sbjct 4477 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTCTCGATGGTGTCCGAGCCCTCAACC 4418 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||||||||| | || ||||| || || ||||| Sbjct 4417 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 4371 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | ||| | || |||||||| || ||||| ||||| | | Sbjct 4141 CCTCCACGGAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 4082 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||| ||||| || || || |||| || | ||| ||||| ||| Sbjct 4081 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGTTGGTCGGGGGGG 4022 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| || || | | | ||||| |||| Sbjct 4021 ATTCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTCTCAATGGTATCGGATCCCTCCACC 3962 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||||||||| | || ||||| || |||||||| Sbjct 3961 TCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAAATTTGCAT 3915 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 ||| || || || || | ||| || | || | |||||||||||| || ||||| ||||| Sbjct 5057 GTTGCCACCACGGAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTC 4998 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 | || || || ||||||| ||||| ||||| || |||| || | ||| ||||| Sbjct 4997 GGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGTTGGTCGGG 4938 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 ||| | || |||||||| |||||| || || | ||| || || | ||| Sbjct 4937 GGGGATTCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTCTCGATGGTGTCGGAGCCCTC 4878 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||||||||| || || || ||||| || || ||||| Sbjct 4877 AACCTCGAGAGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 4827 >seq1210 Length=15033 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 20941 GCCCGTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTAT 21000 || || | || || || || | |||||||| || | ||||||||||| || ||||| | Sbjct 12685 GCTCGATACCACCACGGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGT 12744 Query 21001 AGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGT 21060 |||||| || || || ||||||| ||||| ||||| || | || || | ||| |||| Sbjct 12745 AGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGT 12804 Query 21061 CCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGG 21120 | ||| | || |||||||| |||||| || || | ||| || || Sbjct 12805 CGGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGTGTCCGATC 12864 Query 21121 GCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| || | ||| ||||||||||| || | || || ||||| |||||||| Sbjct 12865 CCTCAACCTCAAGGGTGATGGTCTTGCCTGTGAGAGTCTTTACAAAGATTTGCAT 12919 >seq426 Length=101737 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | || | |||||||||||| ||||| || || || | Sbjct 60 CCTCCACGGAGACGGAGGACGAGGTGGAGAGTGGACTCCTTCTGAATATTGTAATCAGAA 119 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||| || || ||||| || |||| || | ||||||||| || Sbjct 120 AGGGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATTAGACGCTGCTGGTCAGGAGGA 179 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||||| || || | ||| ||||||| ||| Sbjct 180 ATACCCTCCTTGTCTTGAATCTTAGTCTTGACATTTTCGATAGTATCAGAACCCTCAACC 239 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || | ||| ||||||||||| |||| || || ||||| ||||||||| Sbjct 240 TCAAGGGTGATGGTCTTGCCAGTTAGAGTCTTTACAAAGATTTGCATT 287 >seq374 Length=102525 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 20978 AGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCC 21037 |||||||||||| || || || || |||| ||||| || ||||||| || || || || Sbjct 390 AGTGGACTCCTTCTGGATATTGTAATCCGAGAGGGTGCGGCCGTCCTCAAGTTGCTTTCC 331 Query 21038 CGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTT 21097 || |||| || | ||||||||| ||| | ||| |||||||| |||||| || Sbjct 330 AGCGAAAATTAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTAGTCTT 271 Query 21098 CACCTGGCCGACAGTATCACCGGGCTCCG-TTTCCACGGTAATGGTCTTGCCGGTTAACG 21156 || | | | ||||| | | || || ||| | || ||||||||||| || | | Sbjct 270 TACGTTCTCAATGGTATC-CGAGCCTTCGACTTCGAGAGTGATGGTCTTGCCAGTGAGGG 212 Query 21157 TTTTGACAAATATTTGCAT 21175 | |||||||| |||||||| Sbjct 211 TCTTGACAAAGATTTGCAT 193 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | ||| | ||||||||||| |||||||||||||| | Sbjct 191 CCTCCACGAAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGAA 132 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||| || || ||||| || |||| || | ||||||||| ||| Sbjct 131 AGAGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCGGGGGGA 72 Query 21069 ACGCCTTCCTTGTCGGCGATCTT 21091 | ||| |||||||| |||||| Sbjct 71 ATGCCCTCCTTGTCCTGGATCTT 49 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 20978 AGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCC 21037 |||||||||||| || ||||| || || | || || || ||||||| ||||| ||||| Sbjct 618 AGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 559 Query 21038 CGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTT 21097 ||| | || || | ||| ||||| ||| | || |||||||| ||||||| || Sbjct 558 GGCAAAGATGAGACGCTGTTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTTGTCTT 499 Query 21098 CACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGT 21157 || | | | ||||| | ||| |||| |||||||||||||| || | || Sbjct 498 GACGTTCTCAATGGTATCGGAGCCCTCAACCTCCAAAGTAATGGTCTTGCCAGTGAGAGT 439 Query 21158 TTTGACAAATATTTGCAT 21175 || || || |||||||| Sbjct 438 CTTTACGAAAATTTGCAT 421 >seq396 Length=82706 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | || | |||||||||||| || || || || || | Sbjct 60 CCTCCACGGAGACGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATATTGTAATCAGAA 119 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||| || || ||||| || |||| || | ||||||||| || Sbjct 120 AGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGA 179 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATC---ACCGGGCTCC 21125 | || |||||||| ||||| || || | ||| |||||| ||| ||| Sbjct 180 ATACCCTCCTTGTCTTGAATCTTAGTCTTGACATTTTCGATAGTATCGGAACC---CTCA 236 Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || | ||| ||||||||||| |||| || || ||||| ||||||||| Sbjct 237 ACCTCTAGGGTGATGGTCTTGCCAGTTAGGGTCTTTACAAAGATTTGCATT 287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422206054325132