Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_001895.1 Length=33593 Score E Sequences producing significant alignments: (Bits) Value seq98 275 1e-69 seq353 93.3 9e-15 >seq98 Length=166217 Score = 275 bits (304), Expect = 1e-69 Identities = 1047/1611 (65%), Gaps = 43/1611 (3%) Strand=Plus/Minus Query 1287 CAGGGCGTGCATGGTCGCCCAGGCGAGGTCGGCGTGGCTGG-CTTCCTCGCTGCGGCTGG 1345 |||||| |||| |||||| || || |||||||||| || | | | || ||| | | Sbjct 136984 CAGGGCATGCAGCAGCGCCCACGCCAGATCGGCGTGGCCGGTCGTGCGCGA-GCGCCCCG 136926 Query 1346 CCTCATAGGTGGCGCTG-CGTCCGCTGCTGGTCATGGTCTTGCGGATAGCCATAAACGAG 1404 || ||||||| ||| || |||||| || ||||||| |||| || | | ||| Sbjct 136925 CCGTGTAGGTGGT-CTGTCGGCCGCTGGCCGTGCTGGTCTTCTGGATGGCAAGCAGCGAC 136867 Query 1405 CTGGTGATGTCGGTGGCGCTGACGTCGTATTCCAGACAGCCACGGCGGATAACGTCTTTT 1464 ||| |||||||| || | |||| |||||||||| | ||| || || Sbjct 136866 TGGGTCATGTCGGTCCAGCCGGCGTCATATTCCAGACGCTCGTTCTTGATGACATCGAAC 136807 Query 1465 GCCTTGAGCACCATTGCGGTTTTCATTTCCGGCGTGTAGCGGATA----TCACGCGCGGC 1520 ||||||||||||| || |||| || |||| ||||| || ||| | ||| Sbjct 136806 GCCTTGAGCACCAGCCGCGTCTTCACCTCGGGCGAGTAGCTGAAGGTGGTCAACCCCGG- 136748 Query 1521 GGGATAGAACGAGCGCACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAATACC 1580 || ||||| ||| || |||||| ||| ||| || | ||||||||| || || || Sbjct 136747 --GA-AGAACTGGCGGACCAGCTGGGCCACACCGGTGCCCATGCCGGTGGCGTCGATCCC 136691 Query 1581 GATGTATTCGACGTTGTATTTTTCGGTGAGTTTGCGGATGGATTCCGCCTGGGTGGCAAA 1640 |||||| ||| ||| | ||||| || |||| | |||||||| || || Sbjct 136690 GATGTAGGTGACCCAGTAGCGCTGGGTGACCTTCTGGATAAACGCCGCCTGGTCAGCGAA 136631 Query 1641 GTCCATGCCTTTCCACTGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCACCGG 1700 ||||||||| || ||||||||||||| || | | ||| |||||||||| ||| || Sbjct 136630 GTCCATGCCCTTGAACTGGTGACGCTCCAGCACGCGGAACTTGCCACCGGGCACTTGGGG 136571 Query 1701 CGGTGCCAGTACCACGCATCCGGCGCTGTCGCCACGGTGTGACGGGTCGTAACCAATCCA 1760 ||| |||| | |||| |||||||||||||| | | ||||||||| |||||||| Sbjct 136570 CGGCGCCACAATCACGATGCCGGCGCTGTCGCCCGTCTCGGCCGGGTCGTACCCAATCCA 136511 Query 1761 TACCGGGCGGGAGCCGAACG---GATTGGCGGCAAACGGCGCA--TAGTCTTCCCA-TTC 1814 |||| |||| ||| | | | ||||| || ||| | | | | |||| | | Sbjct 136510 CACCGCGCGGTCGCCATATGGGCGCATGGCG--AAGGGGCTGAACTCGCCGGCCCACTCC 136453 Query 1815 TTCCAGCGTGTCGACCATGCAGCGTTGCAGC-TCCTCGAACGGGAACACCGATGCCTTGT 1873 ||||| |||| ||| ||| | |||||| || || | ||||||||| || ||| Sbjct 136452 ACCCAGC-TGTCCACCTGGCACGGCTGCAGCATCGTC-AGCGGGAACACGCTGGCGCTGT 136395 Query 1874 CGTCAACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTGA 1933 |||| || || || ||||| | |||||| || || |||||||||| ||||| | Sbjct 136394 CGTCCACGAACTCGCACATCAGCAGGTTGGCGAATTCCTCGGCGCTGTAATCGCGCCGCA 136335 Query 1934 GCTGCTCAATGTCGAACAGCGTGCAGCCGCCTTTCAGGGCGTCCTCAATGGTGACAATCT 1993 ||| | | |||||||| ||| || | | ||||| | ||||| |||| Sbjct 136334 GCTCGGCCACATCGAACAGATCGCACCCTCGGTCGGCCGCGTCGAGCACTGTGACGATCT 136275 Query 1994 GTCGCCACTGGCCGTCCGCACAGAGAAGCCCACCGGCAAGGGCGTTATGACTGACGTCGA 2053 | ||||| ||||| | ||| | | |||| | | || | || ||||| |||| Sbjct 136274 GCCGCCAGATAGCGTCCTCGCAGCGTCGGCCACTGCCCAGCCGGCCGTGGCTGACATCGA 136215 Query 2054 TTTCCACGCGTTCGGCGGCGCTGGCGCGTCCCCGGTTAAACAGTTCACCCGACCAGAACG 2113 || | | | | | | | ||| | ||| ||| || | || || | |||||| Sbjct 136214 --TCGATACCTGCTGGGAGGTCGGCTTG-CCCTTGTTGAAGCGCTCGCCTGTCCAGAAAT 136158 Query 2114 GGTAGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGAGCGCAGGTGACTCT 2173 |||||| |||||||||| ||||| || ||| ||| |||||| |||| | | | Sbjct 136157 CGTAGGCTTCGTGCGCCATGGTGGAAGGCGTGCTGAAGTAGGTCTTGCGCCATTTCTTGT 136098 Query 2174 GTGAGGCCATACCTGATGCCACCTTACGCAG-TACCTGAAAATTCGGGATCCAGAAAATC 2232 | ||||| || || ||||| ||| | |||| || ||||||| | Sbjct 136097 GCATCGCCATGCCGCTGGCGACCTTGTTCAGCTGGTTGAAGCCGTAGG-TCCAGAAGAAT 136039 Query 2233 TCATCGACGTACAGGTCGCCGTTATGACTCTGCGCGGTGTTGGAGTTGGTGCCGAGAAAA 2292 || |||| ||| | | |||| | | |||||||||| | ||||||||| ||||| Sbjct 136038 TCGTCGAAGTAGAAATTCCCGTGGTAGCCCTGCGCGGTGCGTGCGTTGGTGCCCAGAAAG 135979 Query 2293 ATCAGTTTTGCGCCGTTATTGCCCAGGACAATCGGGTCACCGGTCAGGTCAACGTCAACC 2352 | ||| | |||||| ||| ||||||| || || || ||||| ||||| ||| | | Sbjct 135978 AACAGCTCAGCGCCG---TTGGCCAGGACGATGGGATCGCCGGTGAGGTCCCGGTCCAGC 135922 Query 2353 A-GACGGGCA--AAGGCGATGATGTATTCGCGGAACACATACGCCTGTGTTTTACTGGCC 2409 | || ||| ||| | ||||| | |||| | | |||||| | || || Sbjct 135921 ACCTCGCGCACGAAGCCACGCATGTAGCCCAGGAAGATGTGCGCCTGACTCTTGGATGCG 135862 Query 2410 GACAGAAAAATCTGGTTATGACCGGTTTTCAGGGCACGCAGCAGCGCCTCGCGGGAAAAA 2469 ||| || ||||| || | ||| | |||| || | |||||||||||||| ||| Sbjct 135861 CTCAGGAAGATCTGATTGCGGCCGCTGATCAGCGCGTCGATCAGCGCCTCGCGGGCAAAG 135802 Query 2470 TAAAACGTCGCGCCAATCTGGCGGGATTTCAGGATATCGCGGATGCGGTGCTCAAGCCCG 2529 || | || ||||| ||||| || || || ||||| |||| | | |||| ||| Sbjct 135801 TAGTAGGTGGCGCCGATCTGCCGCGACTTGAGGATCACGCGCGTCC---GCTCGCTGCCG 135745 Query 2530 GCACGATACCAGTGCAGCTGATAGTCGAAAGACTGCTCAAAGAAAATCTGCTCCAGCTTT 2589 || || ||||| | |||| || ||||| || || | ||| ||| |||| | Sbjct 135744 GCGCGGTACCAATCGCGCTGGTAATCGAAGCACCCGTCGAGGAACGCCTGGCGCAGCCGT 135685 Query 2590 TCGATGGCCTCGTCACTGAAAAAATTCTTTTTCGGTTTGCGCCGTC-CGCCTTTGTTACG 2648 || | |||| || ||||| ||| || || | | | || ||| ||| || Sbjct 135684 TCCACTTCCTCTTCGCTGAACTCGTTC-TTGCGGGCCTTCTTCTTCGGGCCAGCGTTGCG 135626 Query 2649 GTTAGCGACGTTCGGATTAAGGTCTGCCTCGTTGCCGGTCTGGCT-GTAGCGGTTGACCC 2707 ||| ||||| || || ||||| ||||||||||| | | || ||| || | || | Sbjct 135625 GTTGGCGACCGCTGGGTTCAGGTCCGCCTCGTTGCC-GCCGCCCTGGTAACGCTGGATGC 135567 Query 2708 GTGCCAGTCGTTCAATCTGGCGTCCCAGCAGGTCAATTTCCTTGAAGTCACCGCCGGTTT 2767 | ||| | || || | ||| || ||||||||| || || |||||||| |||||||| | Sbjct 135566 GGGCCTGCCGCTCCAGCTGCCGATGCAGCAGGTCGATCTCTTTGAAGTCGCCGCCGGTCT 135507 Query 2768 TCTGTGGTTTGATGATGAGCTGGGTCAGCCGCGCTTCC-AGACTCATTTCGACACGGCTG 2826 | | ||| ||| || || || |||||| ||| || | | | ||||| Sbjct 135506 TACCTTCCTTGTGGATCAGGATGGCCAACCGCGCCTCCAAGGCGC-CGCCAACACGCTCC 135448 Query 2827 ATGGGGGCAACGCTGTCCCAGCCGTCGCGCTGTTTCCAGCTCTGCACTGTC 2877 | || | ||| |||||| |||||||| |||||||| || || ||| Sbjct 135447 ACGGTATCGGCGCGGTCCCATTCGTCGCGCGCCTTCCAGCTGTGGACGGTC 135397 Score = 221 bits (244), Expect = 3e-53 Identities = 760/1163 (65%), Gaps = 63/1163 (5%) Strand=Plus/Minus Query 17658 GACTATCATCACGGCGTGCAGGTGCTGGAGATTAACGAGGGCACCCGCGTCATTTCCACC 17717 |||||||| |||||||| | || | ||||| |||| || |||| || ||| Sbjct 123814 GACTATCACCACGGCGTACGTGTCATCGAGATCAACGGCGGTGTCCGCCCGATCCGTACC 123755 Query 17718 GTATCCACGGCCATTGTCGGCATGGTCTGCAC-GGCCAGCGATGCAGATGCGGAAACCT- 17775 | |||| ||| | ||||||| || ||||| ||| || ||||| || || | ||| Sbjct 123754 ATCGCCACCGCCGTCATCGGCATTGTTTGCACCGGCGAG-GATGCCGACGCC--ACCCTG 123698 Query 17776 -TCCCCCTCAATAAACCTGTGCTGATTACCAATGTGCAGAGCGCAATTTCAAAGGCCGGT 17834 |||| ||||| ||| |||||| | || | |||| | | || ||| ||||| || Sbjct 123697 TTCCCGCTCAACCGACCGGTGCTGCTGACTGACGTGCTGGGGGCTATTGGCAAGGCTGGC 123638 Query 17835 AAAAAAGGCACGCTG-GCGGCATCGTTGCAGGCCATCGCTGACCAGTCAAAACCGGTCAC 17893 | ||||| ||| || || ||||||||||||| || |||||| | || | |||| Sbjct 123637 ACCGCCGGCACCCTGCGCCCCA-CGTTGCAGGCCATTGCCGACCAGGCTAACGCCATCAC 123579 Query 17894 CGTTGTCATGCGCGTGGAAGACGGCACCGGTGATGACGAGGAAACGAAACTCGCGCAGAC 17953 || || ||||||||| || ||| ||| ||||| | || || || Sbjct 123578 GGTCGTGGTGCGCGTGGCCGAGGGC----GTG--GACGAC--AGCGCCACC-------AC 123534 Query 17954 CGTTTCCAATATCATCGGCACCACCGATGAAAACGGTCAG---TACACCGGACTAAAAGC 18010 || ||||| |||| || | | || |||| | |||||||| || | || Sbjct 123533 CG---CCAATGTCATTGGTAAGAAGGA------CGGTGCGACCTACACCGGCCTGCAGGC 123483 Query 18011 CATGCTGGCGGCGGAGTC---GGTAACCGGTGTTAAACCGCGTATTCTCGGCGTGCCGGG 18067 |||||| | | || | ||| ||| || ||||| || ||||||| |||||| Sbjct 123482 GCTGCTGGTGTCCGAAGCCCAGGT---CGGGGTACGGCCGCGGATCCTCGGCGCGCCGGG 123426 Query 18068 ACTGGATACCAAAGAGGTGGCTGTTGCACTGGCATCAGTCTGTCAGAAGCTGCGTGCTTT 18127 |||||| ||| | |||| | | ||| ||||| || |||||||||| || | Sbjct 123425 ACTGGACACCCAGCCGGTGACCGCTGCCCTGGCCGTGATCGCCAAGAAGCTGCGGGCCAT 123366 Query 18128 CGGGTATATCAGCGCATGGGGCTGTAAAACCAT----TTCCGAGGTGAAAGCCTATCGTC 18183 | || ||||| | |||| | | | | |||||| | || || || Sbjct 123365 GGCCTACGTCAGCT----GCGCTGCCAGCGCCTCGGTTCCCGAGGCCATCGCTTACCGCG 123310 Query 18184 AGAATTTCAGCCAGCGTGAGCTGATGGTCATCTGGCCGGATTTCCTCGCATGGGATACGG 18243 | | |||||| | || ||||||||| | ||| || || ||| | || | | || | Sbjct 123309 CGCAGTTCAGCGACCGCGAGCTGATGTTGCTCTATCCCGACTTCGTGGCCTTCAACACCG 123250 Query 18244 TCACCAGTACCACCGCCACCGCGTATGCCACCGCCCGTGCGCTGGGGCTGCGCGCTAAAA 18303 | ||||||| || || | || || || |||||||| || |||||||| | | Sbjct 123249 CCGATGCGACCACCGGCATGGCCTTCGCAACGGCACGTGCGCTCGGCCTGCGCGCCATGA 123190 Query 18304 TCGACCAGGAGCAGGGCTGGCATAAAACGCTGTCCAATGTCGGGGTGAACGGTGTTACCG 18363 |||| || |||| ||||||||||| |||||||||| || | || ||| || |||| Sbjct 123189 TCGATGAGCAGCAAGGCTGGCATAAGTCGCTGTCCAACGTGGCCGTAGCCGGCGTGACCG 123130 Query 18364 GCATCAGC--GCATCTGTATTCTGGGATTTGCAGGAGTCCGGC-ACCGATGCTGACCTGC 18420 |||||||| | | | || ||||| ||||||| |||||| ||||| || | | ||| Sbjct 123129 GCATCAGCCGGGACGTCCAT--TGGGACCTGCAGGA-TCCGGCGACCGACGCCGGCATGC 123073 Query 18421 TTAACGAGTCAGGCGTCACTACGCTGATTCGCCGCGACGGTTTCCGCTTCTGGGGTAACC 18480 | || | | | |||| |||||||| | | |||| | | |||||||| | Sbjct 123072 TCAATGCCGCCGATATCACCACGCTGATCAACTCCAACGGGTACAAGTTCTGGGGATCGC 123013 Query 18481 GTACCTGCTCTGATGACCCGCTGTTCCTCTTTGAAAACTACACCCGCACCGCGCAGGTCG 18540 | |||||| ||||| |||||||| ||| || | || ||||||||| |||||| || Sbjct 123012 GCACCTGCAGCGATGAGCCGCTGTTTGCCTTCGAGACCTCCACCCGCACGGCGCAGATCC 122953 Query 18541 TGGCCGACACGATGGCTGAGGCGCACATGTGGGCGGTGGACAAGCC-CATCACTGCAACG 18599 |||||||||| || || |||||||| || || |||||||| | ||| | || Sbjct 122952 TGGCCGACACCATCGCCGAGGCGCAGTTGGTCTACGTCGACAAGCCGCTGCAC-CCCTCG 122894 Query 18600 CTGATTCGCGACATCGTTGACGGCATCAATGCCAAATTCCGTGAGCTGAAAACAAACGGC 18659 ||| | |||||||| | || |||||||| ||||| ||||| |||||| | ||| Sbjct 122893 CTGGTGCGCGACATGCTCGAAGGCATCAACGCCAAGTTCCGCGAGCTGGTGAACGCCGGA 122834 Query 18660 TATATCGTGGATGCGACCTGCTGGTTCAGCGAAGAATCCAACGATGC---GGAAACCCTC 18716 || | | | || || ||||| | ||| | ||||| ||| | | | || Sbjct 122833 TACCTGCTCGGGGCCACGGCCTGGTACGACGAGGGCGCCAAC-CTGCCCACGCAGCTGTC 122775 Query 18717 AAGGCCGGAAAACTGTATATCGACTACGACTATACACCGGTGCCTCCTCTCGAAAACCTG 18776 || || ||| ||||||| |||||| || |||||||| || || ||||||||| Sbjct 122774 CAG--TGGTCGCCTGGCCATCGACTTCGACTACACCCCGGTGCCGCCGCTGGAAAACCTG 122717 Query 18777 ACCCTGCGCCAGCGTATTACCGA 18799 ||| |||||| || ||||| Sbjct 122716 CTGCTGAACCAGCGCATCACCGA 122694 >seq353 Length=102661 Score = 93.3 bits (102), Expect = 9e-15 Identities = 285/432 (66%), Gaps = 13/432 (3%) Strand=Plus/Plus Query 334 CCCGACGTTCTCCGGCTTGCCACCCATCAACTGAAAGGGGATGCGGTGCGCGTCCAGCAG 393 |||| |||||| |||| | ||||||||||| || ||||| ||| | ||||| Sbjct 45064 CCCG-CGTTCTGCGGCACGATGCCCATCAACTGCGGTGGAATGCGCAACGCCGCGAGCAG 45122 Query 394 GTCAGCGGCGCTGGCTTTTTTGATATTaaaaaaaTCGTCCTTCGTCGCCACTTCACTGAG 453 || | |||| |||||||| || |||||||| | ||| || || || | Sbjct 45123 ATCGTCACGGCTGATGTTTTTGATCGAGCTGAATTCGTCCTTGGCCGCAACCTCGCTCAC 45182 Query 454 GGGGATAATTTTAATGCCGTCGGCTTTC--CCCTG-TGGGGCATAGAGAAACAGGTTTTT 510 ||||| | | |||||||| ||||| |||| || || || | ||||||||| Sbjct 45183 CGGGATGAGCTGAATGCCGT---CTTTCTTGCCTGCCGGCGCGTACACAAACAGGTTGCG 45239 Query 511 AAAGTTGTTGCGGCCTTTCGACTTGACCA-TGTTTTCGCGAAGCATTTCGATATCGTTGC 569 ||||||| | |||||||| || || || | ||| || ||||| || | Sbjct 45240 AAAGTTGCCTGGCCCTTTCGAGTTCTTCAGTGCGGT-GCGCAGTGAGTCGATGTCCTCTT 45298 Query 570 GATCCTGCACGGCATCGGTGACATACATGATGTATCCGGCATGTGCGCCATTTTCGTAAT 629 | |||| | || ||||| | |||| ||| | |||||||| ||| || | ||| | Sbjct 45299 CCTTCTGCGCCGCGTCGGTCATGTACAGAATGAAACCGGCATGGCTGCCGTTGTTGTAGT 45358 Query 630 ACTTGCGGCGGAACAACGTGGCCGACTCATTCAGCCAGGCAGAGTTAAGGGCGCTG--AG 687 ||||||| ||||||| |||||| ||| || ||| || || |||||| || Sbjct 45359 ACTTGCGCCGGAACAGCGTGGCGCTCTCGTTGAGCAGTGC--GCTTTGCAGCGCTGCCAG 45416 Query 688 ATATTCCGGCAGGCCGTACAGCTCCTGATTAATATCCGGCTCCAGCAGGTGAAACACGGA 747 | |||||||||||||| | ||||| || ||||| | ||| ||| ||| | | || Sbjct 45417 CCACTCCGGCAGGCCGTAGATTTCCTGGTTGATATCGGCCTCGCGCAAGTGGCAGATCGA 45476 Query 748 GCCGGGCGCGAA 759 ||||| || || Sbjct 45477 ACCGGGGGCAAA 45488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107362832145570