Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1288 383 2e-101 seq1971 150 2e-31 seq1210 131 2e-25 seq504 129 6e-25 seq374 129 6e-25 seq1077 127 2e-24 seq396 109 6e-19 >seq1288 Length=22276 Score = 383 bits (424), Expect = 2e-101 Identities = 586/827 (71%), Gaps = 21/827 (3%) Strand=Plus/Plus Query 116615 TTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGG 116674 ||||| || | ||||| ||||| ||| |||||||||| ||||||||||||||||||||| Sbjct 99 TTCCCTATCAAGTACCCCGACATCTGGAGCATGTACAAGAAGGCCGAGGCGTCGTTCTGG 158 Query 116675 ACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTG---AACGAC 116731 || | |||||| | ||||| | ||| ||||||||| | | |||||| Sbjct 159 ACGGCGGAGGAGATCGACCTCGCGGGCGACCTCTCCGACTGGGACACCAAGCTCAACGAC 218 Query 116732 AACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTC 116791 ||||||||||| || |||| ||||||| ||||| || || || |||||||||||| Sbjct 219 AACGAGCGCCACTTTATCACCAACGTGCTCGCCTTCTTTGCGGCGTCGGACGGCATCGTC 278 Query 116792 AACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTC 116851 |||||||| || | | ||| ||| |||||||| | |||||||||| |||||| Sbjct 279 AACGAGAACCTCGCCACGCGCTTCATGTCCGAGGTGCAAATCCCCGAGGCGCGCTGCTTC 338 Query 116852 TACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGAC 116911 |||||||| || |||||||| || ||| | ||||| || | ||| || |||||| Sbjct 339 TACGGCTTCCAAATCGCCATCGAAAACATCCACTCCGAGACGTACAGTCTGCTGATCGAC 398 Query 116912 ACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGAT---- 116967 || ||| | | | | ||| || | || ||||||||||||||||| Sbjct 399 ACCTACATCAAGGACACCGCGCGCAAGGCCCAGCTCTTCAACGCCATCGAGACGATCCCC 458 Query 116968 GCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGC-CG 117026 |||||||| || ||||||||||||||||| | ||||||||| | | | || | Sbjct 459 GCCGTGCG-CA---AGAAGGCCGAGTGGGCGATCCGCTGGATC----GAAAACTCGCGCA 510 Query 117027 CCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTT 117086 ||| | ||||||||| || || || || |||||||||||| ||||||| |||||| | Sbjct 511 GCTTTGCCGAGCGCCTCGTCGCGTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGT 570 Query 117087 TCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACG 117146 || | | || || ||||||||||| ||||||||||||| |||||| || ||| |||| Sbjct 571 TCTGCTCGATCTTCTGGCTCAAGAAGCGCGGCCTCATGCACGGCCTCACCTTCTCGAACG 630 Query 117147 AGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTC---AAGC 117203 |||| ||| | | |||||||| || || ||||||||||||||| |||| | | |||| Sbjct 631 AGCTGATCAGCCGCGACGAGGGCCTCCACTGCGACTTTGCCTGTCTGCTCTACTCGAAGC 690 Query 117204 ATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCA 117263 || ||| | | |||| | | || | |||| || |||||| |||||| Sbjct 691 TCACCGTCTCGCGTCTGGACGCGCCCACCATCGAGTCGATCATCCGCGACGCCGTCGCCT 750 Query 117264 TCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTG-CGAA 117322 |||| || ||| ||||||| |||||||| || ||| | || | || | || Sbjct 751 GCGAGAAGGAGTTCATCACCGAGGCGCTGCCCGTCGACCTGATCGGCATGAACAGCCGCT 810 Query 117323 ACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCC 117382 || ||| | || |||||||||||| ||||||| | |||||| ||| || | | | | Sbjct 811 AC-ATGGCCCAGTACATCGAGTTCTGCGCCGACCGTCTGCTGGTCGCCCTCGGCTACCGC 869 Query 117383 AAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTC 117429 ||| ||||||| | |||||||| | || | ||| | | ||||| Sbjct 870 AAGATCTACAACGCCGCCAACCCGTTCGAGTGGATGGAGATGATCTC 916 >seq1971 Length=9940 Score = 150 bits (166), Expect = 2e-31 Identities = 161/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| |||| || || | | | Sbjct 4371 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAGGGCTCG 4430 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || || | ||||| |||||||||||| | ||||| Sbjct 4431 GACACCATCGAGAACG-TCAAGACCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 4489 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || ||||| || || || |||| ||||||||| ||||||||| Sbjct 4490 GCAGCGTCTCATCTTTGCCGGCAAGCAACTTGAGGACGGCCGCACCCTCTCCGACTACAA 4549 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| |||| || || || || Sbjct 4550 CATCCAGAAGGAGTCCACTCTTCACCTCGT 4579 Score = 150 bits (166), Expect = 2e-31 Identities = 161/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || ||||| ||||||||| |||| ||||||| | || Sbjct 4599 ATGCAAATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTCGAAGGCTCC 4658 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || || | ||||| |||||||| ||| | ||||| Sbjct 4659 GACACCATTGAGAACG-TCAAGACCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCA 4717 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||| | ||| ||||| ||||| || || | ||||||||| |||||||| Sbjct 4718 ACAGCGTCTCATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCGGACTACAA 4777 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || ||||| || Sbjct 4778 CATCCAGAAGGAGTCTACCCTCCATCTCGT 4807 Score = 140 bits (154), Expect = 3e-28 Identities = 155/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| | | | Sbjct 4143 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGGGCTCG 4202 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || || | ||||| || ||||||||| | ||||| Sbjct 4203 GACACCATCGAGAACG-TCAAGACCAAGATCCAGGACAAGGAAGGCATCCCCCCCGACCA 4261 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||| | ||| || || ||||| || |||| ||||||||| || ||||| Sbjct 4262 ACAGCGTCTCATTTTCGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCTCGGATTACAA 4321 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| |||| || || Sbjct 4322 CATCCAGAAGGAGTCCACCCTCCA 4345 Score = 132 bits (146), Expect = 5e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| ||||||||| | || || || | || Sbjct 3915 ATGCAAATTTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTGGAGGGATCC 3974 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| ||||| || || | ||||| ||||| |||||| | ||||| Sbjct 3975 GATACCATTGAGAACG-TCAAGACCAAGATCCAGGACAAGGAGGGAATCCCCCCCGACCA 4033 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||| | ||| || || ||||| || |||| |||||||| ||||||||| Sbjct 4034 ACAGCGTCTCATTTTCGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAA 4093 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || ||||| || Sbjct 4094 CATCCAGAAGGAGTCTACCCTCCATCTCGT 4123 Score = 132 bits (146), Expect = 5e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| |||||||| |||| || || | | || Sbjct 4827 ATGCAGATTTTCGTCAAGACCTTGACTGGCAAGACCATCACTCTCGAGGTTGAGGGCTCC 4886 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || || | ||||| ||||| |||||| | ||||| Sbjct 4887 GACACCATCGAGAACG-TCAAGACCAAGATCCAGGACAAGGAGGGAATCCCCCCCGACCA 4945 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||| | ||| ||||| ||||| || |||| ||||| || ||||||||| Sbjct 4946 ACAGCGTCTCATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCCGACTACAA 5005 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| |||| || || || || Sbjct 5006 CATCCAGAAGGAGTCCACTCTTCACCTCGT 5035 >seq1210 Length=15033 Score = 131 bits (144), Expect = 2e-25 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || ||||| || ||||| ||||| ||||||||| | || || || | | Sbjct 12919 ATGCAAATCTTTGTAAAGACTCTCACAGGCAAGACCATCACCCTTGAGGTTGAGGGATCG 12860 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || || | ||||| ||||| |||||| | ||||| Sbjct 12859 GACACGATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCCGACCA 12801 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || |||| ||| ||||| ||||| || |||| ||||| || |||||||| Sbjct 12800 ACAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAA 12741 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| |||| || || Sbjct 12740 CATCCAGAAGGAGTCCACCCTCCA 12717 >seq504 Length=56252 Score = 129 bits (142), Expect = 6e-25 Identities = 229/332 (69%), Gaps = 3/332 (1%) Strand=Plus/Minus Query 139373 GGCCTGCACGGCTTCCACGTGCACGAGTTCGGCGACGCGAGCAACGGGTGCACGTCGGCC 139432 || |||||||| |||||||| ||| |||| |||||| | | |||||| |||| ||| ||| Sbjct 35970 GGACTGCACGGATTCCACGTCCACCAGTTTGGCGACACCACCAACGGCTGCATGTCCGCC 35911 Query 139433 GGCGAGCACTTCAACCCCGCGCGCCGGGACCACGGCGCGCCCGACGCCGAGATCAGGCAC 139492 |||| |||||||||||| || ||| ||||| || ||| |||||| || | ||| Sbjct 35910 GGCGCCCACTTCAACCCCTTCGGCAAGGAGCACGGAGCCCCCACCGCCGACGTCCGCCAC 35851 Query 139493 GTCGGCGACCTGGGCAACCTCGAGTCGGCGGGCCGCGACGCGCTCACCGAGGTGAGCCTG 139552 ||||| ||| |||||||||||||| | ||| | ||| ||||| | | || Sbjct 35850 GTCGGAGACTTGGGCAACCTCGAGGCCCACGGCTCTGCCGCCGACACCG-GCT--CGCTC 35794 Query 139553 ACGGACGGCGTCGTGTCCCTGTACGGTCCGCACAGCATCATCGGACGGAGTCTGGTCGTG 139612 | ||| || | |||| | || | || |||||||| || ||||||| Sbjct 35793 TCTGACAAGCTCATCACCCTCTTTGGCGAGAACTCTATCATCGGCCGCTCCATGGTCGTC 35734 Query 139613 CACACGGACAGGGACGATCTGGGCCTCACCGACCATCCATTGAGCAAGACCACCGGCAAC 139672 ||| | ||| ||||| || || ||| | ||| | |||||||||||||| || Sbjct 35733 CACGCCGACGCCGACGACCTCGGTCTCGGAGGCCAGTCCGACAGCAAGACCACCGGTCAC 35674 Query 139673 TCGGGCGGCCGGCTCGCGTGCGGCATCATCGG 139704 | |||| || ||||| ||||| ||||| || Sbjct 35673 GCCGGCGCTCGTCTCGCTTGCGGTATCATTGG 35642 >seq374 Length=102525 Score = 129 bits (142), Expect = 6e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||| ||||| |||||||| |||| ||||||| | | Sbjct 193 ATGCAAATCTTTGTCAAGACCCTCACTGGCAAGACCATCACTCTCGAAGTCGAAGGCTCG 252 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | ||| || || | ||||| |||||||||||| | ||||| Sbjct 253 GATACCATTGAGAACG-TAAAGACTAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 311 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | ||| || || || || || |||| ||||||||| || ||||| Sbjct 312 GCAGCGTCTAATTTTCGCTGGAAAGCAACTTGAGGACGGCCGCACCCTCTCGGATTACAA 371 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || || || || Sbjct 372 TATCCAGAAGGAGTCCACTCTCCACCTCGT 401 Score = 129 bits (142), Expect = 6e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| |||||||| || ||||| ||||| ||||| || | || || || | | || Sbjct 421 ATGCAAATTTTCGTAAAGACTCTCACTGGCAAGACCATTACTTTGGAGGTTGAGGGCTCC 480 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| ||||| ||| || | ||||| ||||| || ||| | ||||| Sbjct 481 GATACCATTGAGAACG-TCAAGACAAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCA 539 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||||| || ||||| ||||| || |||| ||||| || || ||||| Sbjct 540 ACAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCTGATTACAA 599 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| |||| || || || || Sbjct 600 CATCCAGAAGGAGTCCACTCTCCACCTCGT 629 >seq1077 Length=16265 Score = 127 bits (140), Expect = 2e-24 Identities = 159/214 (74%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 40717 GGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAA 40775 || || ||||||||| |||| || || | | |||||| | | |||| |||||| || Sbjct 5246 GGTAAGACCATCACCCTCGAGGTTGAGGGCTCCGACACTATCGAGAACG-TCAAGGCCAA 5304 Query 40776 AATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACA 40835 || | ||||| ||||| |||||| | ||||| || || ||||||| ||| ||||| || Sbjct 5305 GATCCAGGACAAGGAGGGAATCCCCCCCGACCAACAGCGCCTCATCTTCGCCGGCAAGCA 5364 Query 40836 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCT 40895 ||| || |||| |||||||| ||||||||||||||||||||| | || || || | Sbjct 5365 GCTCGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTCCACTT 5424 Query 40896 AGTGTTGCGCTTGAGGGGCGGCGGCTTGCATGAA 40929 ||| | ||| || | || ||||| | ||| ||| Sbjct 5425 GGTGCTCCGCCTGCGCGGTGGCGG-TGGCAAGAA 5457 >seq396 Length=82706 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || ||||| || || || ||||| ||||||||| | || || || | | Sbjct 287 AATGCAAATCTTTGTAAAGACCCTAACTGGCAAGACCATCACCCTAGAGGTTGAGGGTTC 228 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | ||| ||||| || |||| ||||| ||||| || || | ||||| Sbjct 227 CGATACTATCGAAAATGTCAAGACTAAGATTCAAGACAAGGAGGGTATTCCTCCTGACCA 168 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | ||| ||||| || || || || | |||||||| || ||||| Sbjct 167 GCAGCGTCTGATTTTCGCTGGCAAGCAACTTGAGGATGGCCGCACCCTTTCTGATTACAA 108 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || || || || Sbjct 107 TATCCAGAAGGAGTCCACTCTCCACCTCGT 78 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515152691641520