Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_002167.1 Length=39732 Score E Sequences producing significant alignments: (Bits) Value seq846 2396 0.0 seq2798 268 2e-67 seq4950 199 1e-46 seq447 161 3e-35 seq406 84.2 6e-12 >seq846 Length=12855 Score = 2396 bits (2656), Expect = 0.0 Identities = 1373/1403 (98%), Gaps = 0/1403 (0%) Strand=Plus/Plus Query 21230 GCTTTTTTATACTAAGTTGGCATTATAAAAAAGCATTGCTTATCAATTTGTTGCAACGAA 21289 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 122 GCTTTTTTATACTAAGTTGGCATTATAAAAAAGCATTGCTTATCAATTTGTTGCAACGAA 181 Query 21290 CAGGTCACTATCAGTCAAAATAAAATCATTATTTGATTTCAATTTTGTCCCACTCCCTGC 21349 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 182 CAGGTCACTATCAGTCAAAATAAAATCATTATTTGATTTCAATTTTGTCCCACTCCCTGC 241 Query 21350 CTCTGTCATCACGATACTGTGATGCCATGGTGTCCGACTTATGCCCGAGAAGATGTTGAG 21409 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 242 CTCTGTCATCACGATACTGTGATGCCATGGTGTCCGACTTATGCCCGAGAAGATGTTGAG 301 Query 21410 CAAACTTATCGCTTATCTGCTTCTCATAGAGTCTTGCAGACAAACTGCGCAACTCGTGAA 21469 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 302 CAAATTTATCGCTTATCTGCTTCTCATAGAGTCTTGCAGACAAACTGCGCAACTCGTGAA 361 Query 21470 AGGTAGGCGGATCCCCTTCGAAGGAAAGACCTGATGCTTTTCGTGCGCGCATAAAATACC 21529 |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 362 AGGTTGGCGGATCCCCTTCGAAGGAGAGACCTGATGCTTTTCGTGCGCGCATAAAATACC 421 Query 21530 TTGATACTGTGCCGGATGAAAGCGGTTCGCGACGAGTAGATGCAATTATGGTTTCTCCGC 21589 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 422 TTGATACTGTGCCGGATGAAAGCGGTTCACGACGAGTAGATGCAATTATGGTTTCTCCGC 481 Query 21590 CAAGAATCTCTTTGCATTTATCAAGTGTTTCCTTCATTGATATTCCGAGAGCATCAACAT 21649 ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 482 CAAGAATCTTTTTGCATTTATCAAGTGTTTCCTTCATTGATATCCCGAGAGCATCAACAT 541 Query 21650 GCAATGCTGTTGGGATGGCAATTTTTACGCCTGTTTTGCTTTGCTCGACATAAAGATATC 21709 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 542 GCAATGTTGTTGGGATGGCAATTTTTACGCCTGTTTTGCTTTGCTCGACATAAAGATATC 601 Query 21710 CATCTACGATATCAGACCACTTCATTTCGCATAAATCACCAACTCGTTGCCCGGTAACAA 21769 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 602 CATCTACGATATCAGACCACTTCATTTCGCATAAATCACCAACTCGCTGCCCGGTAACAA 661 Query 21770 CAGCCAGTTCCATTGCAAGTCTGAGCCAACATGGTGATGATTCTGCTGCTTGATAAATTT 21829 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 662 CAGCCAGTTCCATTGCAAGTCTAAGCCAACATGGTGATGATTCTGCTGCTTGATAAATTT 721 Query 21830 TCAGGTATTCGTCAGCCGTAAGTCTTGATCTCCTTACCTCTGATTTTGCTGCGCGAGTGG 21889 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 722 TCAGGTATTCGTCAGCCGTAAGTCTTGATCTCCTTACCTCTGATTTTGCAGCGCGAGTGG 781 Query 21890 CAGCGACCGGGTTTGTTGTTATATGGCCTTCAGCTATTGCCTCTCGGAATGCATCGCTCA 21949 | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 782 CTGCGACCGGGTTTGTTGTTATATGGCCTTCAGCTATAGCCTCTCGGAATGCATCGCTCA 841 Query 21950 GTGTTGATCTGATTAACTTGGCTGACGCAGCCTTGCCCTCGTCTATGTATCCATTGAGCA 22009 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 842 GTGTTGATCTGATTAACTTGGCTGATGCCGCCTTGCCCTCGTCTATGTATCCATTGAGCA 901 Query 22010 TTGCCGCAATTTCTTTTGTGGTGATGTCTTCAAGTGGAGCATCAGGCAGCCCCCTCCTTA 22069 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 902 TTGCCGCAATTTCTTTTGTGGTGATGTCTTCAAGTGGAGCATCAGGCAGACCCCTCCTTA 961 Query 22070 TTGCTTTAATTTTGCTCATGTAATTTATGAGTGTCTTCTGCTTGATTCCTCTGCTGGCGA 22129 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 962 TTGCTTTAATTTTGCTCATGTAATTTATGAGTGTCTTCTGCTTGATTCCTCTGCTGGCCA 1021 Query 22130 GGATTTTTTCGTAGCGATCAAGCCATGAATGTAACGTAACAGAATTATCACTGTTGATTC 22189 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1022 GGATTTTTTCGTAGCGATCAAGCCATGAATGTAACGTAACGGAATTATCACTGTTGATTC 1081 Query 22190 TTGCTGTCAGAGGCTTGTGTTTGTGTCCTGAAAATAACTCAATGTTGGCCTGTATAGCTT 22249 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1082 TCGCTGTCAGAGGCTTGTGTTTGTGTCCTGAAAATAACTCAATGTTGGCCTGTATAGCTT 1141 Query 22250 CAGTGATTGCTATCCTCCTGTCTCGGCCTAATCCGAACTCTTTACCCGTCCTTGGGTCCC 22309 |||||||||| || | |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1142 CAGTGATTGCGATTCGCCTGTCTCGGCCTAATCCAAACTCTTTACCCGTCCTTGGGTCCC 1201 Query 22310 TGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTAGGGGGTAAATCCCGGCGCTCAT 22369 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1202 TGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTAGGGGGTAAATCCCGGCGCTCAT 1261 Query 22370 GACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAGGCTACCTGTTACTGGTCGATTT 22429 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1262 GACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAGGCTACCTGTTACTGGTCGATTT 1321 Query 22430 AAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTCTCTTCCATCCTTAACCGGAGGA 22489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1322 AAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTCTCTTCCATCCTTAACCGGAGGA 1381 Query 22490 GGGAATATCCTGCATTCGCGCACCCATCGACGAACTGTTTCAAGGCTTCTTGGGCGTCGC 22549 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1382 GGGAATATCCTGCACTCGCGTACCCATCGACGAACTGTTTCAAGGCTTCTTGGGCGTCGC 1441 Query 22550 TGGCGAGCGTTCCACTCCTGAAGTGTCAAGTACATCGCAAAGTCTCCGCAATTACACGCA 22609 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1442 TGGCGTGCGTTCCACTCCTGAAGTGTCAAGTACATCGCAAAGTCTCCGCAATTACACGCA 1501 Query 22610 AGAAAAAGCCGCATTGATGCGGC 22632 ||||||| |||| | | ||||| Sbjct 1502 AGAAAAAACCGCCATCAGGCGGC 1524 >seq2798 Length=1848 Score = 268 bits (296), Expect = 2e-67 Identities = 186/210 (89%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 21041 GACAAAAAATTAGCGCAAGAAGACAAAA--ATCACCTTGCGCTAATGCTCTGTCTCAGGT 21098 |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 1531 GACAAAAAATTAGCGCAAGAAGACAAAAAAATCACCTTGCGCTAATGCTCTGTTACAGGT 1590 Query 21099 CACTAATACTATCTAAGTAGTTGATTCATAGTGACTGGATATGTTGTGTTTTGTAGCATC 21158 ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1591 CACTAATACCATCTAAGTGGTTGATTCATAGTGACTGGATATGTTGTGTTTTGTAGCATT 1650 Query 21159 ATGTAGTCTATTTTTTATACTAAAGATATTGTAACACATTGATATTAATGATTTTTAATG 21218 ||| ||||||||||||| ||| || ||| ||| | ||||||||||| |||||| | Sbjct 1651 ATGCAGTCTATTTTTTAGACTGAATCAATTATAAGCCGTTGATATTAATTGTTTTTACCG 1710 Query 21219 TTTCACGTTCAGCTTTTTTATACTAAGTTG 21248 |||||| |||| |||||||||||||| ||| Sbjct 1711 TTTCACATTCAACTTTTTTATACTAACTTG 1740 >seq4950 Length=777 Score = 199 bits (220), Expect = 1e-46 Identities = 207/271 (76%), Gaps = 23/271 (8%) Strand=Plus/Minus Query 37025 ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTTTGCCTGTCA 37084 |||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 344 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 285 Query 37085 TGGGCTGTTAATCATTACCGTGATAACGCCATCGCCTACAAAGAGCAGCGCGACAAA--- 37141 |||||||||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 284 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 225 Query 37142 GCCGCA----TCCATC--------------ATCGCTGACATGCAGAAGCGTCAACGTGAT 37183 ||| | | | | || |||||||||||| ||| || |||||| Sbjct 224 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 165 Query 37184 GTAGCAGAACTTGACGCCAGATACACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 37242 || || | ||| || | | |||||| |||||| | ||| |||| || || || || || Sbjct 164 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GA 106 Query 37243 AAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 37273 ||| |||| || |||| | ||||||||| Sbjct 105 TGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 75 >seq447 Length=48793 Score = 161 bits (178), Expect = 3e-35 Identities = 349/508 (69%), Gaps = 18/508 (4%) Strand=Plus/Plus Query 12686 CGATCCGTCGCTGGATGAATGCAATGGCACGCTGACGGCCTGCAAACTCCGATTCGGCGA 12745 ||| ||| | ||||| | ||||| ||| ||| | ||||||| | || |||||||| Sbjct 27480 CGACCCGGCCCTGGACCAGTGCAAGGGCTGCCTGTCTTCCTGCAAGTTACGCTTCGGCGA 27539 Query 12746 AAATAACGAACTCTCGTTTGGTGGCTTCCCGGGCACGTCTTTGAT---CAGGAGTTGAT- 12801 | ||||||||||| || || || ||||| | | ||| |||| | |||| ||| Sbjct 27540 GTACAACGAACTCTCCTTCGGCGGATTCCCCGCCGTGTCCCTGATAGCCCGGAGCTGACC 27599 Query 12802 ATGCGTCAGAAAACCATAGATGCGATTATGGCGCATGCTGCAGCTGAATATCCTCTTGAG 12861 ||||| || | | ||| | ||||| ||||||||| ||||| || ||||| ||| Sbjct 27600 ATGCGCAAGCACATCATTGCGGCGATCCAGGCGCATGCGGCAGCGGAGTATCCGAAAGAG 27659 Query 12862 TGTTGCGGCGTGGTGGCG-CAGAAAAGCCG-CGTTGAACGTTATTTCCCGTGCCGGAATC 12919 || ||||| || || | | | | || | || ||| || |||||||||||||| Sbjct 27660 TGCTGCGGGCTGCTGCTGGCTGTAGGGCGGGCGCAGAAG--TACTTCCCGTGCCGGAACA 27717 Query 12920 TTGCCGCGGCGCCGGAGGACAATTTTGTCCTTTGCCCCGAAGACTACGCAGCTGCTGAGG 12979 | ||| ||| |||| | || | ||| ||| || || |||||||| || || |||| Sbjct 27718 TCGCCACGGAGCCGAACGAAGAGTTTCGACTTGATCCTGAGGACTACGCTGCAGCGGAGG 27777 Query 12980 A-CTGGG-GAACGGTGATCGCCATCGTTCACAGTCACCCTGACGCCACTACGCAGCCG-- 13035 | ||||| ||| ||||||| || |||||| ||||| |||||||| | | |||| Sbjct 27778 ACCTGGGCGAA--GTGATCGGTATTGTTCACTCGCACCCGGACGCCACCAGCCGGCCGTC 27835 Query 13036 AGCGAACTGGATAAAGCGCAATGCGACGCAACGCTTTTACCCTGGCATATTGTGAGCTGG 13095 | || || || || ||||| || || || |||||||| ||| || ||| Sbjct 27836 ACCGCAC--GACCTGGCCATGTGCGAGGCCACCGCCTTGCCCTGGCACATTCTGTCGTGG 27893 Query 13096 CCGGAGGGGGATTTACGCACCATCCAGCC-GCGCGGAGAACTGCCGCTGCTGGAGCGTCC 13154 || ||||||||||| || || ||| ||| || | || || ||| ||||| |||| || Sbjct 27894 CCCGAGGGGGATTTGCGGACGATCACGCCAACGGGCAGCAC-GCCACTGCTCAAGCGGCC 27952 Query 13155 GTTTGTGCTTGGACACTTCGACTGCTGG 13182 |||||| | ||| || ||||||||| Sbjct 27953 GTTTGTACATGGCGCCTGGGACTGCTGG 27980 Score = 96.9 bits (106), Expect = 9e-16 Identities = 196/291 (67%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 16436 GCGGTACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAGTCAGAGGC 16495 ||| |||||| || | |||||| || | || ||||||||||| | |||| ||||| Sbjct 32318 GCGCTACGGCGATAACCCGCTGGAGATCAGCGCGATCGGCTGCACGCGTGAGTCTGAGGC 32377 Query 16496 GAACCGAAAGGGGCGCTGGGGTATTCTCACCAATAACAAGGATCGCGTTGTTTCGTTTGA 16555 | | || || |||| | |||||||| |||||| || | || ||||| Sbjct 32378 GCAGCGCCGCGGCAAGTGGGCGTTGCTCACCAACTCCAAGGACCGGGCGGTAACGTTTCG 32437 Query 16556 TGTCGGGCTGGACGGAAACATTCCGCAGCCGGGCTACATCATCGCCGTGGCAGACGAGCT 16615 |||||| ||||||||| || || | ||| |||||| || | | | || ||||| || Sbjct 32438 TGTCGGCCTGGACGGACGTATCCCTCTGCCTGGCTACGTCGTTCCGATCGCTGACGAACT 32497 Query 16616 GCTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGCGTTATCAAACT 16675 ||| |||| | |||| || |||||| ||||| ||||| || |||| || Sbjct 32498 GCTGGCCGGTCGGCCCGTGGGTGGGCGCATCTCAGCCGTAAACGGCAAAGTCATCACCCT 32557 Query 16676 TGACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTCAACCTGCC 16726 ||||||| | | || ||| ||||| || || || ||||||||||| Sbjct 32558 GGACCGCGACACCCAGGCCAAACCCGGTGACCGGCTGATCCTCAACCTGCC 32608 >seq406 Length=38937 Score = 84.2 bits (92), Expect = 6e-12 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 22906 ACATCTCTACCCCCTGCGCCCGTACTTCAGCCAGGAAAGCATCGGTGGCTGGGGTTTCGA 22965 ||||||| || ||||||||||| ||||||||||||||||| || || || |||||||||| Sbjct 29694 ACATCTCCACACCCTGCGCCCGCACTTCAGCCAGGAAAGCGTCTGTCGCCGGGGTTTCGA 29753 Query 22966 TATC 22969 |||| Sbjct 29754 TATC 29757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127005223042356