Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1971 150 2e-31 seq374 138 1e-27 seq1210 129 5e-25 seq426 125 6e-24 seq504 113 4e-20 seq396 111 1e-19 seq1077 96.9 3e-15 >seq1971 Length=9940 Score = 150 bits (166), Expect = 2e-31 Identities = 174/231 (75%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | | | ||||||||||| || ||||| || || ||||||||||| Sbjct 4371 TACCTCCACGGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCG 4312 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| ||||| ||||| ||||||||| | ||||||||||| || ||||| | Sbjct 4311 AGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGTTGGTCGGGGG 4252 Query 118630 GTATGCCCTCCTTGTC-TGTAATTTTTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTC 118687 | ||||| |||||||| || | | || || || || | |||| |||||||| || ||| Sbjct 4251 GGATGCCTTCCTTGTCCTGGA--TCTTGGTCTTGACGTTCTCGATGGTGTCCGAGCCCTC 4194 Query 118688 GACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| ||| | || |||||||| || || || || || |||||||| Sbjct 4193 GACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 4143 Score = 129 bits (142), Expect = 5e-25 Identities = 150/199 (75%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||| | ||||| ||||| || || || || Sbjct 4567 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCG 4508 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC-TGTAATTTTTTGT-T 118659 || |||||||||||||||| ||||| || |||||||||||||| || | | || || | Sbjct 4507 GCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGA--TCTTGGTCT 4450 Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 | || | |||| |||||||| || ||| ||||||| ||| | || ||||||||||| | Sbjct 4449 TGACGTTCTCGATGGTGTCCGAGCCCTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGGG 4390 Query 118720 TTTTTACAAAAATCTGCAT 118738 | || || || |||||||| Sbjct 4389 TCTTGACGAAGATCTGCAT 4371 Score = 122 bits (134), Expect = 8e-23 Identities = 152/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| |||||||| || || |||||||| ||| || ||||| ||||| ||||| Sbjct 4117 TGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGC 4058 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC-TGTAATTTT 118654 ||||||||| | ||||||||||| || ||||| || || ||||||||||| || | | | Sbjct 4057 TTTCCAGCGAAAATGAGACGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGGA--TCT 4000 Query 118655 TTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGG 118713 | || || || | || | ||| || | | ||| ||||| | ||| | || ||||||| Sbjct 3999 TGGTCTTGACGTTCTCAATGGTATCGGATCCCTCCACCTCAAGGGTGATGGTCTTGCCGG 3940 Query 118714 TCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || || || ||||| ||||| Sbjct 3939 TCAGGGTCTTGACGAAAATTTGCAT 3915 Score = 120 bits (132), Expect = 3e-22 Identities = 148/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||| | |||||| ||||||||||| || || Sbjct 5023 GTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCG 4964 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC-TGTAATTTTTTGT-T 118659 ||| | ||||||||||| || ||||| || || ||||||||||| || | | || || | Sbjct 4963 GCGAAAATGAGACGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGGA--TCTTGGTCT 4906 Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 | || | |||| |||||| | || ||| ||||||| || | || ||||| |||| | Sbjct 4905 TGACGTTCTCGATGGTGTCGGAGCCCTCAACCTCGAGAGTGATGGTCTTGCCAGTCAAGG 4846 Query 118720 TTTTTACAAAAATCTGCAT 118738 | || || ||||||||||| Sbjct 4845 TCTTGACGAAAATCTGCAT 4827 Score = 116 bits (128), Expect = 3e-21 Identities = 151/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| |||||||| || || |||||||| || | ||||| |||||||||||| Sbjct 4801 TGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCGAGCTGC 4742 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGTAATTTT 118654 || || ||| | ||||||||||| || ||||| || ||||||||||||| ||| | | | Sbjct 4741 TTGCCGGCGAAAATGAGACGCTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGGA--TCT 4684 Query 118655 TTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGG 118713 | || || || | || | |||||| | || |||||||||| ||| | || ||||| | Sbjct 4683 TGGTCTTGACGTTCTCAATGGTGTCGGAGCCTTCGACCTCGAGGGTGATGGTCTTGCCAG 4624 Query 118714 TCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || || || || ||||| Sbjct 4623 TCAAGGTCTTGACGAAGATTTGCAT 4599 >seq374 Length=102525 Score = 138 bits (152), Expect = 1e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || ||||||||||||||| | |||||| ||||||||||| Sbjct 852 GTGGAGAGTGGACTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCGTCCTCGAGCTG 793 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || || ||||||||||||| |||||||| || ||||||||||||||| ||| || Sbjct 792 CTTGCCGGCAAAGATGAGACGCTGTTGATCGGGGGGAATGCCCTCCTTGTCTTGAATCTT 733 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | |||||||| || ||| ||||| | || | || || || || Sbjct 732 AGTCTTGACGTTCTCAATGGTGTCCGAGCCCTCAACCTCCAGAGTGATAGTCTTTCCAGT 673 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || ||||| ||||| ||||| Sbjct 672 GAGGGTCTTTACGAAAATTTGCAT 649 Score = 118 bits (130), Expect = 9e-22 Identities = 152/206 (74%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || ||||||||||| | |||||| ||||||||||| Sbjct 624 GTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCGAGCTG 565 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGTAATTT 118653 || || || ||||||||||||| || ||||| || || |||||||||| ||| | | Sbjct 564 CTTGCCGGCAAAGATGAGACGCTGTTGGTCGGGGGGAATACCCTCCTTGTCCTGGA--TC 507 Query 118654 TTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCG 118712 ||||| || || | || | ||| || | || ||| ||||| | || | || ||||| Sbjct 506 TTTGTCTTGACGTTCTCAATGGTATCGGAGCCCTCAACCTCCAAAGTAATGGTCTTGCCA 447 Query 118713 GTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| ||||| ||||| ||||| Sbjct 446 GTGAGAGTCTTTACGAAAATTTGCAT 421 Score = 109 bits (120), Expect = 5e-19 Identities = 151/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || || |||||||| | ||||| ||||| || || Sbjct 396 GTGGAGAGTGGACTCCTTCTGGATATTGTAATCCGAGAGGGTGCGGCCGTCCTCAAGTTG 337 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGTAATTT 118653 ||||||||| | || ||||||||||| ||||| || ||||||||||||| ||| | || Sbjct 336 CTTTCCAGCGAAAATTAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 277 Query 118654 TTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGG 118713 | ||| || | || | ||| |||| || ||||| |||| || | || ||||| | Sbjct 276 AGTCTTT-ACGTTCTCAATGGTATCCGAGCCTTCGACTTCGAGAGTGATGGTCTTGCCAG 218 Query 118714 TCAGAGTTTTTACAAAAATCTGCATGGCT 118742 | || || || ||||| || |||||| || Sbjct 217 TGAGGGTCTTGACAAAGATTTGCATGCCT 189 Score = 100 bits (110), Expect = 2e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| || |||||||| || ||| | |||||| ||||||||| || Sbjct 167 TGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGAAAGAGTGCGGCCATCCTCGAGTTGC 108 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || |||||| | |||||||||||||| ||||| || |||||||||||||| Sbjct 107 TTGCCAGCGAAAATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTC 58 >seq1210 Length=15033 Score = 129 bits (142), Expect = 5e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| || ||||| || || |||||||| || | |||||| ||||| Sbjct 12710 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTC 12769 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || ||| |||| |||||||| || ||||| || || ||||||||||| Sbjct 12770 GAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTG 12829 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| ||||||| | ||| ||||| | ||| | || || Sbjct 12830 GATCTTGGCCTTGACGTTCTCGATCGTGTCCGATCCCTCAACCTCAAGGGTGATGGTCTT 12889 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| || ||||| |||||||| || |||||| Sbjct 12890 GCCTGTGAGAGTCTTTACAAAGATTTGCATG 12920 >seq426 Length=101737 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || ||||| |||||||| | ||||| ||||||||| || Sbjct 83 GTGGAGAGTGGACTCCTTCTGAATATTGTAATCAGAAAGGGTGCGGCCATCCTCGAGTTG 142 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || |||||| | || ||||||||||| || ||||| || |||||||||||| ||| || Sbjct 143 CTTGCCAGCGAAAATTAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCTTGAATCTT 202 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | ||||| || || | | ||| ||||| | ||| | || ||||| || Sbjct 203 AGTCTTGACATTTTCGATAGTATCAGAACCCTCAACCTCAAGGGTGATGGTCTTGCCAGT 262 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 ||||| |||||||| || ||||| Sbjct 263 TAGAGTCTTTACAAAGATTTGCAT 286 >seq504 Length=56252 Score = 113 bits (124), Expect = 4e-20 Identities = 228/338 (67%), Gaps = 9/338 (3%) Strand=Plus/Plus Query 46984 CCGATTATGCCGCAGGCGATGCGACCGCCCGAGTTGCCGGTGGTCTTGCTCAATGGATGA 47043 || || || ||||| |||| ||| |||| | || |||||||||||||| | || Sbjct 35642 CCAATGATACCGCAAGCGAGACGAGCGCCGGCGTGACCGGTGGTCTTGCTGTCGGACTGG 35701 Query 47044 CCGCCGAGACCCAAGTCGTCGCGGTCCGAGTGAATGACCAGACTGCGTCCGATGACGCTG 47103 || |||||||| | ||||||| ||| | ||| | ||||| ||| ||||||| | Sbjct 35702 CCTCCGAGACCGAGGTCGTCGGCGTCGGCGTGGACGACCATGGAGCGGCCGATGATAGAG 35761 Query 47104 TATTCGCCGAAAAGACTCATCACGTTGTC---GATCTTATCGATTTCGGTCAAACTGTTT 47160 | ||||| || || | || | ||||| || | || | |||| | Sbjct 35762 TTCTCGCCAAAGAGGGTGATGAGCTTGTCAGAGAGCGAGCCGGTGTCGGCGGCA------ 35815 Query 47161 GATTTTTTCGCTTCAATGTTACCCAGATCGCCTACGTGACGCTCGGCGGCGTTGGGAGCG 47220 || | || || | ||| |||| || || ||||| || || ||||| |||| || Sbjct 35816 GAGCCGTGGGCCTCGAGGTTGCCCAAGTCTCCGACGTGGCGGACGTCGGCGGTGGGGGCT 35875 Query 47221 CCGTGATTGCGGCCCAACGGATTATAGTGTTCGCCGGCCGACGTGCAGCCGTTGCTCGTG 47280 ||||| | ||| || || || |||| ||||||| ||| ||||||||||| | ||| Sbjct 35876 CCGTGCTCCTTGCCGAAGGGGTTGAAGTGGGCGCCGGCGGACATGCAGCCGTTGGTGGTG 35935 Query 47281 TCGCCGAATTCGTGCACGTGAAATCCGTGAAGCCCCTT 47318 ||||| || | ||| ||||| |||||||| || ||||| Sbjct 35936 TCGCCAAACTGGTGGACGTGGAATCCGTGCAGTCCCTT 35973 >seq396 Length=82706 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || || |||||||| | ||||| |||||| || || Sbjct 83 GTGGAGAGTGGACTCCTTCTGGATATTGTAATCAGAAAGGGTGCGGCCATCCTCAAGTTG 142 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || |||||| | || ||||||||||| || ||||| || |||||||||||| ||| || Sbjct 143 CTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCTTGAATCTT 202 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | ||||| || || | | ||| ||||| | ||| | || ||||| || Sbjct 203 AGTCTTGACATTTTCGATAGTATCGGAACCCTCAACCTCTAGGGTGATGGTCTTGCCAGT 262 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || |||||||| || ||||| Sbjct 263 TAGGGTCTTTACAAAGATTTGCAT 286 >seq1077 Length=16265 Score = 96.9 bits (106), Expect = 3e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| || ||||| || || |||||||| || | ||||| ||||| Sbjct 5428 CACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTC 5369 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || ||| ||||||| ||||| || ||||| || || ||||||||||| Sbjct 5368 GAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTG 5309 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGT 118699 || || || || | |||| ||||| | || ||| ||||||| ||| Sbjct 5308 GATCTTGGCCTTGACGTTCTCGATAGTGTCGGAGCCCTCAACCTCGAGGGT 5258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433775797970284