Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_002484.2 Length=56426 Score E Sequences producing significant alignments: (Bits) Value seq61 154 5e-33 seq257 140 1e-28 seq401 102 3e-17 seq82 102 3e-17 seq284 87.8 6e-13 seq5602 84.2 8e-12 seq1055 84.2 8e-12 >seq61 Length=131009 Score = 154 bits (170), Expect = 5e-33 Identities = 235/335 (70%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 11583 GTTGGCATTGAGCAAGAGAAGCTTGCTGACATCTTCAAGGACGTTAACGACAAGGTAGGC 11642 || ||| | | ||| |||||||| || || || | || ||||| | |||||| | ||| Sbjct 118285 GTGGGCGTCGCGCACGAGAAGCTGGCCGATATTCTGAAAGACGTGCAGGACAAGATTGGC 118344 Query 11643 GACTTCCTCAATACCGGCGGTGGCGCGCTTGCCGATTTCTTCGAGAACGTAGCGCCTAAA 11702 |||||| | | || ||||| ||||| | || || || |||||| | || || Sbjct 118345 GACTTCGCCCAGACGGGCGGCGGCGCCATGAAGGACTTTTTTGAGAACATCGCCCCGCGC 118404 Query 11703 GTTGGCGTGACCGCAGACCAGTTCCGGAATCTGAGCGGCCCCCAGGCCCTTGGCTTGTAC 11762 || |||||||| || || ||||||||||| || ||||||| | ||||| ||| ||||| Sbjct 118405 GTGGGCGTGACTGCCGAGCAGTTCCGGAAGCTCGCCGGCCCCGACGCCCTGGGCCTGTAC 118464 Query 11763 GTCTCGAGCCTGGAAAAGGCCAAGGTCAGCCAGTCGGACATGACCTTCTATCTTGAGGCT 11822 || ||||||||| ||||| | ||| | || |||||||||| | ||||| Sbjct 118465 TTCAAGAGCCTGGAGCGCGCCAACCTGTCGCAGACCGAGCTGACCTTCTACATGGAGGCA 118524 Query 11823 ATTGCGAGCGATGCGACTGCGCTGCTCCCGCTGCTTCGCAATAACGCTGAAGGATTCAAG 11882 || || |||||| || | ||| |||||||||| | || ||| || |||||| Sbjct 118525 ATCGCCAGCGATTCGGCCAAGCTAATCCCGCTGCTGCAGAACAACAGCATCGGCTTCAAG 118584 Query 11883 ACCTTTGGTGACGCCGCCCAGGCCGCTGGCGCGAT 11917 | || || |||||||||||||| |||||||| Sbjct 118585 CAGTGGGGCGAAGCCGCCCAGGCCGCCGGCGCGAT 118619 >seq257 Length=84698 Score = 140 bits (154), Expect = 1e-28 Identities = 324/478 (68%), Gaps = 34/478 (7%) Strand=Plus/Plus Query 35947 CCGTCGTCGTCC------TCGCCGCGAGTGGTGATGTTCAGCAGTGCGGAAAGCACGTAA 36000 ||||||||||| |||||| || |||||||||||||| || | | |||||| Sbjct 78459 CCGTCGTCGTCGCGGATATCGCCG---GTCGTGATGTTCAGCAGCGCACACATCACGTAG 78515 Query 36001 CGCTTGCCGTAGCTGACCGATGATCCAAGAGACTGAACGGCGTTCTTGCTGCCACT--CG 36058 |||||||| ||| | |||||| |||| || ||| ||| || |||| || | || Sbjct 78516 CGCTTGCCATAGGTAGTCGATGAGCCAACAGCCTGTACGTCG---TTGCGACCTTTTCCG 78572 Query 36059 -TGTCTAGCGGAACGAGCATCGTCGTCTGCTCTCGGTGTCCGGCGCAGTGCATCAGAATT 36117 | || | ||| | | ||| || || ||||| ||||| || | | |||||||| ||| Sbjct 78573 ATATCAATCGGCAGGCTCATGGTGGTTTGCTCGCGGTGGCCACCCCGGTGCATCAAGATT 78632 Query 36118 CCAGTAAC-CGAAACGCCAGTCTGAACAGTCTCGACGCGGAAGCTCACTGCGAAACCGAA 36176 ||||| || | | |||| | | | | | || || |||| | | || || ||| Sbjct 78633 CCAGTGACACTGATCGCC-TTTTCAGCGTTTTCCACCTTGAAGGTGATGGCAAACCCGTG 78691 Query 36177 CCGCTGCATGATCGGCTTCACGATGTCGTTGATGTCTTCGAAGGTCGCGTAGTTGCTGCG 36236 | |||||||||||||||||| | ||| |||||| |||| || |||||| | | | Sbjct 78692 CTGCTGCATGATCGGCTTCAAGGTGTGTGTGATGTGGTCGAGCGTGGCGTAGGAGTTTCC 78751 Query 36237 CTTTTGGCCGTTGACGGTGATAGCG-CCACGCTCGGCAATGNNNNNNNNTTCGCTTTGCA 36295 | || ||| |||| || ||| |||| ||| | || |||| Sbjct 78752 TGTGTGTAGGTTAACGGCACCTTCGAACACAGTCGG-GATG---------TTGCACTGCA 78801 Query 36296 TGGCGGCCATGGATGCGTTGAACTCAGCCT-CTGCGCTGC--GGGACTGCATCCGTTCGT 36352 | ||||||| | || ||||| ||| | || ||| | ||||||||| || |||| Sbjct 78802 TTTCGGCCATTGCGGCATTGAA---AGCTTGCTCAGCTTCCTTGGACTGCATGCGCTCGT 78858 Query 36353 GCATGGCCATCAGGCGCTCCATTTTCTCGATGTCACACGCCGGATCGGCTGCGGCACG 36410 ||||||||| |||||||||||| ||||||||||| || | |||||||| || ||||| Sbjct 78859 GCATGGCCAGCAGGCGCTCCATCTTCTCGATGTCGCAGGTTGGATCGGCGGCAGCACG 78916 >seq401 Length=77198 Score = 102 bits (112), Expect = 3e-17 Identities = 169/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 48914 TGAAGCTGTTGGCCAGGGAGATCGGATGCCCGGTGCTCCCGCTCTGCCAGCTCAACCGCG 48973 ||||| |||||||| ||| || ||||| || || |||| | ||| | |||| Sbjct 62835 TGAAGGGGTTGGCCAAAGAGTTCAATTGCCCCGTCATCGCGCTATCGCAGTTGTCCCGCC 62894 Query 48974 GATGTGAGTCTCGCCCGGATAAGCGCCCGGTGCTCAGCGACCTACGCGAGTCCGGCGCCA 49033 |||||| || || | |||||||| ||| | ||| | || ||||||||||| | Sbjct 62895 AGTGTGAGCAGCGGCCCAACAAGCGCCCTGTGAACGCAGACTTGCGGGAGTCCGGCGCGA 62954 Query 49034 TCGAGCAAGACGCGGACATCGTGATGTTCGTGTACCGCGATGAAGTCTATTTCCCGAACA 49093 ||||||| |||||||||||| | |||||||| || || || || ||||| |||| ||| Sbjct 62955 TCGAGCAGGACGCGGACATCATCATGTTCGTCTATCGAGACGAGGTCTACAACCCGGACA 63014 Query 49094 GCGATAAGAAGGGCATCGGCGAAATCCTGATCCGGAAGAATCGGGACGGAGAAATCGGCA 49153 || | ||||| | | ||| | | || | ||| | ||| |||| |||| ||| | Sbjct 63015 CTGAGTACAAGGGGGTTGCCGAGTTGATCCTCGGCAAGCACCGGAACGGTGAAACCGGTA 63074 Query 49154 GCGT 49157 ||| Sbjct 63075 CCGT 63078 >seq82 Length=126987 Score = 102 bits (112), Expect = 3e-17 Identities = 105/135 (78%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 48943 CCGGTGCTCCCGCTCTGCCAGCTCAACCGCG-GATGTGAGTCTCGCCCGGATAAGCGCCC 49001 |||||| || |||| | ||||||||||||| | || || | || | || |||||||| Sbjct 80350 CCGGTGATCGCGCTGTCCCAGCTCAACCGCTCGCTG-GAAACGCGTACCGACAAGCGCCC 80408 Query 49002 GGTGCTCAGCGACCTACGCGAGTCCGGCGCCATCGAGCAAGACGCGGACATCGTGATGTT 49061 |||| | |||||| ||||| |||||||| |||||||| ||||||||||| | |||| Sbjct 80409 GGTGATGGCCGACCTTCGCGAATCCGGCGCTATCGAGCAGGACGCGGACATGATCGTGTT 80468 Query 49062 CGTGTACCGCGATGA 49076 | | |||||||| || Sbjct 80469 CATCTACCGCGACGA 80483 >seq284 Length=207326 Score = 87.8 bits (96), Expect = 6e-13 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 48923 TGGCCAGGGAGATCGGATGCCCGGTGCTCCCGCTCTGCCAGCTCAACCGCGGATGTGAGT 48982 |||||| ||| || ||||||||| | | || | ||||||||||| |||| Sbjct 36381 TGGCCAAGGAATTCAACTGCCCGGTGGTTGCCCTGTCGCAGCTCAACCGATCTCTTGAGC 36322 Query 48983 CTCGCCCGGATAAGCGCCCGGTGCTCAGCGACCTACGCGAGTCCGGCGCCATCGAGCAAG 49042 || ||| | || |||||| | | |||| | || || ||||| || |||||||| | Sbjct 36321 AGCGTCCGAACAAACGCCCGATCAACTCCGACTTGCGGGAATCCGGAGCGATCGAGCAGG 36262 Query 49043 ACGCGGACATCGTGATGTTCGTGTACCGCGATGAAGTCTATTTCCCGAACAGCGATAAGA 49102 | || ||| | | |||||||| ||||| || || || ||| |||| | | ||| | | Sbjct 36261 ATGCTGACGTGATCATGTTCGTATACCGGGACGAGGTGTATCACCCGGAGACCGAGCATA 36202 Query 49103 AGGGCATCGGCGAAATCCTGATCCGGAAGAATCGGGACGGAGAAATCGGCA 49153 | ||||||| |||||| | ||| | || | || |||| |||||||| Sbjct 36201 AAGGCATCGCTGAAATCATTATCGGTAAACAGCGTAACGGGCCAATCGGCA 36151 >seq5602 Length=305 Score = 84.2 bits (92), Expect = 8e-12 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 48916 AAGCTGTTGGCCAGGGAGATCGGATGCCCGGTGCTCCCGCTCTGCCAGCTCAACCGCGGA 48975 ||||| ||||| | |||| ||| | ||||| || || |||| ||||||||||| || Sbjct 183 AAGCTTTTGGCGAAGGAGCTCGAAGTTCCGGTTGTCGCGATCTGTCAGCTCAACCGTGGT 124 Query 48976 TGTGAGTCTCGCCCGGATAAGCGCCCGGTGCTCAGCGACCTACGCGAGTCCGGCGCCATC 49035 ||| || | || ||||| ||| | || |||||| || |||||||| | || Sbjct 123 CCCGAGCAGCGAACCGACAAGCGTCCGCAGGTCGCCGACCTTCGTGAGTCCGGATCGCTC 64 Query 49036 GAGCAAGACGCGGACATCGTGATGTTCGTGTACCGC 49071 ||||| ||||| ||||| ||||| | |||||||| Sbjct 63 GAGCAGGACGCCGACATGGTGATTCTGCTGTACCGC 28 >seq1055 Length=31167 Score = 84.2 bits (92), Expect = 8e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 27036 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 27094 || ||||||||||||||||||||||||| || ||||||||||||||| | ||||||||| Sbjct 21115 ACTGGATTTAGGTTCCAGCGCCGCAAGGTGTAAGAGTTCGAGTCTCTTCATCCGCACCA 21057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180419471882712