Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1210 105 4e-18 seq374 104 2e-17 seq1971 102 5e-17 seq1077 89.7 3e-13 >seq1210 Length=15033 Score = 105 bits (116), Expect = 4e-18 Identities = 173/247 (70%), Gaps = 7/247 (3%) Strand=Plus/Plus Query 34157 TCGAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAG 34216 |||| || || || || | ||||||| ||| | || || ||||| ||||||||| Sbjct 12687 TCGATACCACCACGGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAG 12746 Query 34217 TCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCG 34276 || || || ||| |||| || | ||||||||| ||||| || || ||||| |||||| Sbjct 12747 TCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCG 12806 Query 34277 ACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGAT 34336 ||| | | ||||||||| ||||| ||| | | | |||| || |||| Sbjct 12807 GGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGTGTC---CGAT 12863 Query 34337 ---TCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 || || || | |||||||| ||||| |||||||| || |||||||| ||||| ||| Sbjct 12864 CCCTCAACCTCAAGGGTGATGGTCTTGCCTGTGAGAGTCTTTACAAAGATTTGCAT-GCT 12922 Query 34394 CGAATGG 34400 ||||| Sbjct 12923 ATAATGG 12929 >seq374 Length=102525 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| || ||||| || ||||| || || || ||| |||| Sbjct 404 AGGACGAGGTGGAGAGTGGACTCCTTCTGGATATTGTAATCCGAGAGGGTGCGGCCGTCC 345 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||| || |||||||| || |||||||||||| ||| | || ||||||||| Sbjct 344 TCAAGTTGCTTTCCAGCGAAAATTAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 285 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||||| | | || | ||| | |||||| || | |||||||| Sbjct 284 TGGATCTTAGTCTTTACGTTCTCAATGGTATCCGAGCCTTCGACTTCGAGAGTGATGGTC 225 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| ||||| || || |||||||| ||||| Sbjct 224 TTGCCAGTGAGGGTCTTGACAAAGATTTGCAT 193 Score = 82.4 bits (90), Expect = 5e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||| |||||||| || ||| | || || | |||||||| |||||| Sbjct 155 TCCTTCTGAATGTTATAGTCGGAAAGAGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAA 96 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 ||||| |||||||||||| ||| | || ||||||||| Sbjct 95 ATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTC 58 >seq1971 Length=9940 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||||||||| ||| |||| || | |||||| || |||||| Sbjct 4105 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAAA 4046 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| ||||| |||||| ||| | | ||||||||| ||||| ||| | | Sbjct 4045 ATGAGACGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTC 3986 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||||| || || || | |||||||| |||||||| || || || || Sbjct 3985 TCAATGGTATCGGATCCCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACG 3926 Query 34379 AAGATCTGCAT 34389 || || ||||| Sbjct 3925 AAAATTTGCAT 3915 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| || ||||| |||||||||||||| || ||| |||| Sbjct 4582 AGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 4523 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||||| || || ||||| |||||||||||| ||| | || ||||||||| Sbjct 4522 TCAAGTTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 4463 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | || | || || || | |||||||| Sbjct 4462 TGGATCTTGGTCTTGACGTTCTCGATGGTGTCCGAGCCCTCAACCTCGAGGGTGATGGTC 4403 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| || || || || ||||||||||| Sbjct 4402 TTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 4371 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || ||| | || || | ||||||||| |||||| Sbjct 4789 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAA 4730 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| ||||| |||||| ||| | || ||||||||| ||||| ||| | | Sbjct 4729 ATGAGACGCTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTC 4670 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | |||| |||||| || | |||||||| ||||| || | || || || Sbjct 4669 TCAATGGTGTCGGAGCCTTCGACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACG 4610 Query 34379 AAGATCTGCAT 34389 ||||| ||||| Sbjct 4609 AAGATTTGCAT 4599 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| || ||||| |||||||||||||| || ||| |||| Sbjct 5038 AGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCC 4979 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| ||||||||||| ||||| |||||| ||| | | ||||||||| Sbjct 4978 TCGAGCTGCTTGCCGGCGAAAATGAGACGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCC 4919 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | |||| || || || | |||||||| Sbjct 4918 TGGATCTTGGTCTTGACGTTCTCGATGGTGTCGGAGCCCTCAACCTCGAGAGTGATGGTC 4859 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || | || || || || |||||||| Sbjct 4858 TTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 4827 >seq1077 Length=16265 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||||||| ||| | || || ||||| ||||||||||| || Sbjct 5445 CCACCGCGCAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 5386 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||||||| ||||| ||||| ||||| |||||| ||| Sbjct 5385 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCGGGGGGG 5326 Query 34283 ACGCTCTCCTTGTC 34296 | | ||||||||| Sbjct 5325 ATTCCCTCCTTGTC 5312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323031338057120