Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq19 147 5e-30 seq44 100 6e-16 seq1288 91.5 3e-13 >seq19 Length=879724 Score = 147 bits (162), Expect = 5e-30 Identities = 291/431 (68%), Gaps = 0/431 (0%) Strand=Plus/Plus Query 248782 CTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACG 248841 |||||| || | ||| || | || ||||| | | ||||| |||| || ||||| Sbjct 584697 CTGGACAGCACCATTATTTATGACAGGGATTTTGGATTCGATTATTTTGGGTTTAAAACC 584756 Query 248842 CTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATG 248901 || || ||||| ||||| || ||||| || || | || || ||||| || || || Sbjct 584757 CTTGAAAAATCCTATCTGCTGAAAATAGAAGGACAAATTGTAGAACGCCCGCAACATTTG 584816 Query 248902 TTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTAC 248961 || ||||| || || || ||||||||||| || || || || || | | | | ||||| Sbjct 584817 TTTATGCGTGTTGCCGTAGGGATTCACAAAGAAGATATTGAAAGTGCGATTGCAACGTAT 584876 Query 248962 ACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACC 249021 | | |||||||| |||||| | || ||||| || || || | || || || | |||| Sbjct 584877 AACCTGATGAGTGAGCGCTGGTTTACGCATGCAACCCCAACTTTATTTAATGCAGCTACC 584936 Query 249022 GTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGC 249081 || ||| || || |||||| | || ||||||| |||||| | | || || Sbjct 584937 CCTAAACCTCAAATGTCTTCCTGCTTTTTACTGACCATGCAGGACGACAGTATTGAAGGA 584996 Query 249082 ATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTC 249141 ||||| || || | ||||| || || || ||||| || ||| || || || ||| | Sbjct 584997 ATTTACGATACTTTAAAACAAACCGCTAAAATTTCACAAAGCGCAGGTGGTATTGGTTTA 585056 Query 249142 TCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGAT 249201 | || |||||||| || | ||| || || || || ||||| ||| ||| || Sbjct 585057 AGCATCCATAACATCCGTGCCACGGGATCTTATATTGGTGGAACAAACGGGACCAGCAAT 585116 Query 249202 GGTATCGTACC 249212 || || ||||| Sbjct 585117 GGGATTGTACC 585127 >seq44 Length=77107 Score = 100 bits (110), Expect = 6e-16 Identities = 301/463 (65%), Gaps = 5/463 (1%) Strand=Plus/Plus Query 248986 ACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGC 249045 || || ||||| || || ||||||||| | |||||| || ||| || ||| ||| Sbjct 9300 ACGCACGCCACGCCAACCCTCTTCAACTCGGGTACCCCCACACCCCAGATGTCCTCTTGC 9359 Query 249046 TTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACG 249105 || || | ||| | || ||| ||||||| || || || || ||||| ||| Sbjct 9360 TTCCTCGTCCAGATGAAGGAGGACAGCATCGACGGTATCTACGAGACACTTAAGCAGTGC 9419 Query 249106 GCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAG 249165 || || || || | || || || ||||| || || || ||| ||||| || | Sbjct 9420 GCCCTCATCTCAAAGTCTGCCGGTGGTCTCGGTATCGCCATCCACAAGATCCGTGCCAGC 9479 Query 249166 GGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGC 249225 | || |||||| ||||| || || | | || ||||||| | ||||| | Sbjct 9480 CGCTCCTACATCCGCGGTACCAACGGCACCTCGAACGGACTCGTACCAATGCTTCGCGTC 9539 Query 249226 TTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCC 249282 || | ||| ||| | | | || |||||| || | || ||||| | || ||| Sbjct 9540 TTCAATGACACTGCCCGCTACGTCGACCAGGGTGGCGGAAAGCGCAAGGGTGCCTTTGCC 9599 Query 249283 ATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAAC 249342 | || | || ||||||||||| | || |||||||| || | |||||| || Sbjct 9600 GTCTACCTCGAGCCATGGCACGCCGACGTCTTTGAGTTCCTTGATCTTCGCAAGAACCAC 9659 Query 249343 GGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTC 249402 ||||| ||| ||| | || || ||||||||||||| || |||||||| || ||||| Sbjct 9660 GGCAAGGAGGAGATGCGTGCCCGCGACCTCTTCTACGCGCTCTGGGTCTCTGATCTGTTC 9719 Query 249403 ATGCGCCGCGTCAAGGCCGACGGCGATTGGA--CGCTTCTTTC 249443 ||| || ||| || || || || |||| | ||||| || Sbjct 9720 ATGGAGCGTGTCGAGACCAACTCTGACTGGAGTCTCTTCTGTC 9762 >seq1288 Length=22276 Score = 91.5 bits (100), Expect = 3e-13 Identities = 127/173 (73%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 157277 TCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATCCACTCGAATGGGTTGGCG 157336 || || ||||| ||||| | ||||||||| ||||| |||||||||||||| ||||||||| Sbjct 943 TCGAAGAAGTTTGTCTTGCGCTGGAGAGAGATCATCTCCATCCACTCGAACGGGTTGGCG 884 Query 157337 CAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTAGTCCGCCACA-AACTTGAT 157395 |||||| | |||| ||| || || | ||| ||| | || | || |||| ||| Sbjct 883 GCGTTGTAGATCTTGCGGTAGCCGAGGGCGACCAG-CAGACGGTCGGCGCAGAACTCGAT 825 Query 157396 GTACTCTGTCATG-CTCTTCTCGCTGATACCGATGAGCGCGACGGGAAGCGCC 157447 ||||| | |||| | || | | || ||||| || ||||||| |||||| Sbjct 824 GTACTGGGCCATGTAGCGGCT-GTTCATGCCGATCAGGTCGACGGGCAGCGCC 773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073624324934336