Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_002730.1 Length=38297 Score E Sequences producing significant alignments: (Bits) Value seq4950 349 8e-92 seq2798 131 4e-26 seq846 114 3e-21 >seq4950 Length=777 Score = 349 bits (386), Expect = 8e-92 Identities = 226/248 (91%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 17319 ATGAGCAGGGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTTTGCCTGTCA 17378 |||| ||| || |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 344 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 285 Query 17379 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGAGCAGCGCGACAAAAAC 17438 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 284 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 225 Query 17439 ACCAGAGAACTGAAGCTGGCGAACGCCACCATTACTGACATGCAACAGCGCCAGCTTGAT 17498 ||||||||||||||||||||||||| | |||||||||||||| |||||||| |||| Sbjct 224 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 165 Query 17499 GCTGATGCACTCGATGCTAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGAT 17558 | || |||||| |||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 164 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAATGAT 105 Query 17559 GCTCTTCG 17566 ||||| || Sbjct 104 GCTCTGCG 97 >seq2798 Length=1848 Score = 131 bits (144), Expect = 4e-26 Identities = 81/87 (93%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 47 GGATCACTCTACCTTTTCATCAAGCCAGTCCGCCCACCACTGCATCATTTCTCTGCGCTT 106 |||| |||| || |||||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 1425 GGATTACTCCACTTTTTCATCAAGCCAATCCGTCCACCACTGCATCATTTCTCTGCGCTT 1484 Query 107 ATCGAGATACTGAGCATGGTTGTAAAT 133 ||||||||||||||| ||||||||||| Sbjct 1485 ATCGAGATACTGAGCGTGGTTGTAAAT 1511 >seq846 Length=12855 Score = 114 bits (126), Expect = 3e-21 Identities = 66/68 (97%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 1695 CAGGCAATAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATA 1754 || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1496 CACGCAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATA 1555 Query 1755 TTGGTTAC 1762 |||||||| Sbjct 1556 TTGGTTAC 1563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122413786173666