Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1210 140 3e-28 seq1971 122 7e-23 seq374 116 3e-21 seq426 107 2e-18 seq396 102 6e-17 seq1077 86.0 5e-12 >seq1210 Length=15033 Score = 140 bits (154), Expect = 3e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||| ||||||||||| || ||| |||| || Sbjct 12711 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCG 12770 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| |||||||||||||| || | |||||||||||| Sbjct 12771 AGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGG 12830 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | ||||| ||||| ||||| | ||| || |||||| Sbjct 12831 ATCTTGGCCTTGACGTTCTCGATCGTGTCCGATCCCTCAACCTCAAGGGTGATGGTCTTG 12890 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || |||||||| ||||||||||||||| Sbjct 12891 CCTGTGAGAGTCTTTACAAAGATTTGCATG 12920 >seq1971 Length=9940 Score = 122 bits (134), Expect = 7e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||||||| ||| ||| |||| || || || ||||| ||||| Sbjct 4106 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAA 4047 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | |||||||||||||| || | |||||||||||| || || ||| || Sbjct 4046 AATGAGACGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTGGTCTTGACGTT 3987 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | | || ||||||||||| | ||| || |||||||| ||||| ||||| || Sbjct 3986 CTCAATGGTATCGGATCCCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTGAC 3927 Query 45325 AAAGATTTGCAT 45336 || |||||||| Sbjct 3926 GAAAATTTGCAT 3915 Score = 120 bits (132), Expect = 2e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| |||||||||||| || ||| |||| || ||||| Sbjct 4574 GTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGTTG 4515 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || ||||| || || | ||||| |||||||| || | |||||||||||| || || Sbjct 4514 CTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 4455 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | ||||| ||||| ||||| | ||| || |||||||| || Sbjct 4454 GGTCTTGACGTTCTCGATGGTGTCCGAGCCCTCAACCTCGAGGGTGATGGTCTTGCCGGT 4395 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 ||| ||||| || ||||| ||||| Sbjct 4394 CAGGGTCTTGACGAAGATCTGCAT 4371 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||| |||||||| || || ||| |||| || Sbjct 4351 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCA 4292 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| ||||| || | |||||||||||||| || | || ||||||||| Sbjct 4291 AGCTGCTTTCCAGCGAAAATGAGACGCTGTTGGTCGGGGGGGATGCCTTCCTTGTCCTGG 4232 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | ||||| ||||| ||||| | ||| || |||||| Sbjct 4231 ATCTTGGTCTTGACGTTCTCGATGGTGTCCGAGCCCTCGACCTCGAGGGTGATGGTCTTG 4172 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| || ||||| ||||| Sbjct 4171 CCGGTGAGGGTCTTGACGAAGATCTGCAT 4143 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| |||||||||||| || ||| |||| || || || Sbjct 5030 GTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTG 4971 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| || | |||||||||||||| || | |||||||||||| || || Sbjct 4970 CTTGCCGGCGAAAATGAGACGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTT 4911 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| ||||| ||||| | || || |||||||| || Sbjct 4910 GGTCTTGACGTTCTCGATGGTGTCGGAGCCCTCAACCTCGAGAGTGATGGTCTTGCCAGT 4851 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || || || ||||| Sbjct 4850 CAAGGTCTTGACGAAAATCTGCAT 4827 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || ||| | || || || || || |||||||| Sbjct 4790 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 4731 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | |||||||||||||| || | |||||||||||| || || ||| || Sbjct 4730 AATGAGACGCTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTT 4671 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| || || ||||| | ||| || |||||||| |||| ||||| || Sbjct 4670 CTCAATGGTGTCGGAGCCTTCGACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTGAC 4611 Query 45325 AAAGATTTGCAT 45336 ||||||||||| Sbjct 4610 GAAGATTTGCAT 4599 >seq374 Length=102525 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| |||||||| || || ||| |||| || || || Sbjct 624 GTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCGAGCTG 565 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || ||||| || || | |||||||||||||| || | ||||||||||||| || || Sbjct 564 CTTGCCGGCAAAGATGAGACGCTGTTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTT 505 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 | ||| || | | | | | || ||||| ||||||| ||||| |||||||| || Sbjct 504 TGTCTTGACGTTCTCAATGGTATCGGAGCCCTCAACCTCCAAAGTAATGGTCTTGCCAGT 445 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 |||||||| || || |||||||| Sbjct 444 GAGAGTCTTTACGAAAATTTGCAT 421 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||||||||||||| ||| || ||| |||| || || || Sbjct 852 GTGGAGAGTGGACTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCGTCCTCGAGCTG 793 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || ||||| || || | |||||||| ||||| || | ||||||||||| ||| || Sbjct 792 CTTGCCGGCAAAGATGAGACGCTGTTGATCGGGGGGAATGCCCTCCTTGTCTTGAATCTT 733 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | ||||| ||||| ||||||| || || ||||| || || Sbjct 732 AGTCTTGACGTTCTCAATGGTGTCCGAGCCCTCAACCTCCAGAGTGATAGTCTTTCCAGT 673 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || || |||||||| Sbjct 672 GAGGGTCTTTACGAAAATTTGCAT 649 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| || ||||| || || ||| |||| || ||||| Sbjct 396 GTGGAGAGTGGACTCCTTCTGGATATTGTAATCCGAGAGGGTGCGGCCGTCCTCAAGTTG 337 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||| ||||| || | ||||| |||||||| || | |||||||||||| || || Sbjct 336 CTTTCCAGCGAAAATTAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 277 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | | ||| || || || || | || || |||||||| || Sbjct 276 AGTCTTTACGTTCTCAATGGTATCCGAGCCTTCGACTTCGAGAGTGATGGTCTTGCCAGT 217 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| ||||||||||||||| Sbjct 216 GAGGGTCTTGACAAAGATTTGCATG 192 >seq426 Length=101737 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||||||| ||||| || || ||| | || || ||||| Sbjct 83 GTGGAGAGTGGACTCCTTCTGAATATTGTAATCAGAAAGGGTGCGGCCATCCTCGAGTTG 142 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| || | ||||| ||||| ||||| | |||||||||||| ||| || Sbjct 143 CTTGCCAGCGAAAATTAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCTTGAATCTT 202 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | || |||||| ||||| | ||| || |||||||| || Sbjct 203 AGTCTTGACATTTTCGATAGTATCAGAACCCTCAACCTCAAGGGTGATGGTCTTGCCAGT 262 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 |||||||| |||||||||||||| Sbjct 263 TAGAGTCTTTACAAAGATTTGCAT 286 >seq396 Length=82706 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| || ||||| || || ||| | || || ||||| Sbjct 83 GTGGAGAGTGGACTCCTTCTGGATATTGTAATCAGAAAGGGTGCGGCCATCCTCAAGTTG 142 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| |||| ||||| ||||| ||||| | |||||||||||| ||| || Sbjct 143 CTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCTTGAATCTT 202 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | || |||||| ||||| | ||| || |||||||| || Sbjct 203 AGTCTTGACATTTTCGATAGTATCGGAACCCTCAACCTCTAGGGTGATGGTCTTGCCAGT 262 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||||||||| Sbjct 263 TAGGGTCTTTACAAAGATTTGCAT 286 >seq1077 Length=16265 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| ||||||||||| || ||| |||| || Sbjct 5427 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCG 5368 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || |||||||| || | |||||||||||||| || | |||||||||||| Sbjct 5367 AGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCC 5311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395025475711867