Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq19 170 2e-37 >seq19 Length=879724 Score = 170 bits (188), Expect = 2e-37 Identities = 574/883 (65%), Gaps = 18/883 (2%) Strand=Plus/Minus Query 13911 TTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATAT 13970 |||||||||| |||| || | ||| |||||||| || ||||| |||| ||| || || Sbjct 584135 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 584076 Query 13971 TTTCCATAAAATCAAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAAT 14029 | |||||||||||||| ||||| || | ||| | | | ||| | |||| ||||| Sbjct 584075 TCTCCATAAAATCAAACGGATTGGTGG-CATGATATATTTTGGTATAACCCAGTTCCTGC 584017 Query 14030 AGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 14089 || |||| || |||| ||||||||||| || ||||| | | |||||| || || Sbjct 584016 AGCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATC 583957 Query 14090 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATA 14149 || || || | || || | |||||| ||||| || || || ||| ||| Sbjct 583956 AGGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGATA 583897 Query 14150 ATAATCGTAATAATTTCATTAGAAGGAGGATATTTT--AGATGTTTAAAAATTAAACACG 14207 || || | ||| | | || |||||| || |||| ||| | || | Sbjct 583896 ATTCCATGAACGACTTCCT--GGCTCAGTTTATTTTTGAGCATTTTATAAAGCAGGCAGG 583839 Query 14208 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 14267 |||| |||||||| | ||||||||||| ||| | || || ||| |||| |||| Sbjct 583838 CAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCCTG 583779 Query 14268 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTC 14327 |||||| |||| |||||| ||||| || || | | ||| ||| ||||| || | Sbjct 583778 GCATCAGGCCTCTTTTTTTCAACCAGAAGATCGAACAGAAGCTCCCGCTGAAGAAAATGC 583719 Query 14328 CCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCC 14387 | || ||||| || || || | || ||||| |||| ||| | | |||| Sbjct 583718 CTTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAA------ATTTCCGCCCTCAATCC 583665 Query 14388 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA 14447 | |||||||| | |||||| || | | || | || || | |||| || | Sbjct 583664 AGCGCAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGAACA 583605 Query 14448 AATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 14507 || || |||| || | | ||| || ||||| || || | ||| |||||| Sbjct 583604 GCCTGTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTTTCAG 583545 Query 14508 AGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTA 14567 |||| ||||||||||| ||||| || ||||||||||| | ||||| | |||| Sbjct 583544 AGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGCTGTA 583485 Query 14568 C--CTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAA 14625 | | || | | || | | | || | |||||||| || || || ||||| || ||||| Sbjct 583484 CTTCGCTCA-TGAAGT-TCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCAAA 583427 Query 14626 AAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAAT-CGG 14684 ||| || | ||| | ||| || | |||| | | | | || | ||| | | Sbjct 583426 AAAAGCAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCCAGTGCTT 583367 Query 14685 CTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTAT 14744 || || | |||||| || | ||| ||| | ||||| ||||| || || || |||| Sbjct 583366 CT-GGTCATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCACTCTTCTTAT 583308 Query 14745 ACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14787 ||||| |||| ||||| ||| ||||| |||| ||||| Sbjct 583307 ACATTTCCCAGATTTCAGGGTATTTAATAGGCAAAAGAACAAA 583265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482283335212360