Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq19 269 3e-67 seq1288 138 1e-27 >seq19 Length=879724 Score = 269 bits (298), Expect = 3e-67 Identities = 1027/1594 (64%), Gaps = 46/1594 (3%) Strand=Plus/Minus Query 62679 GCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCA 62738 ||| || ||||||| |||||||| || | ||||||| | || ||| | || ||| Sbjct 585919 GCAGCGAAATAAATCGTTTCAAAAATTTCTTTATTTAAAATTTTTGCCCCTTCACTTTCA 585860 Query 62739 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62798 ||||| || | || ||||| || || || ||||| || ||||| | ||| | ||| Sbjct 585859 AATGGTAAACGCATCAGGATAAAAGCATCTGCCAATCCCTGTACACCTAAACCAACTGGT 585800 Query 62799 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 62858 || || | | | || || ||| |||||| | |||||||||||| ||| |||||| Sbjct 585799 CTGTGGCGCATGTTGGAATTTTTAGCTTCCTCTACCGGATAATAATTATGATCAATAATT 585740 Query 62859 TTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGC 62918 ||||| || || | | | | ||||| | | ||| || |||||| Sbjct 585739 TTATTCAGGTTCAGGGTAGCCTGATAGGTTACATCATATAATTTCTGATGATCAAACTCT 585680 Query 62919 CCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCAT-- 62976 || | || ||||| | ||| || | || ||||| ||||| || || ||||| | Sbjct 585679 CCGTTGATGACAAATCTTGGCAAAGCCAACGAGGCCAGGTTACATACAGCAACCTCGTCT 585620 Query 62977 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAAT 63036 | | | | ||| | ||| || || || ||||| || || ||||| |||||||||| Sbjct 585619 TTGGAA--GTATACTCTATAATTTCTGTACAAAGGTTGGAACTTTTGATGGTTCCTAAAT 585562 Query 63037 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTT 63096 |||| || || || |||| ||||| ||||| | | | || || || |||| Sbjct 585561 TTTGCTGGTTGGATTTGCTGTTTGCTGCATCTTTATACAACAGATAAGGGGTTCCGGTTT 585502 Query 63097 CAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTT----G 63152 ||||||| || || | ||| || ||| | || | || |||| || | ||| | Sbjct 585501 CAATCTGTGAATCCAGAATGGCAAACCAAAGCTCTTGTGC-TTTA--ATGGTTTTACGGG 585445 Query 63153 TATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTG 63212 | ||||| || ||||||| | ||| || ||||| || | || || || | Sbjct 585444 CACGTCCTT-CTTTTTCGTAACGCTCATATAAAGCATCGAATTCTGCACCA-AAGCAATC 585387 Query 63213 T-CCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCG 63271 | ||| || || ||||| ||||| | || ||| ||||||| || | || | Sbjct 585386 TGCCAGTCCCGGGGCTTCATGAGGACAGAATAAACTCCAGTCTCCGTTTTCTTCTACCCT 585327 Query 63272 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCT 63330 | |||| || || ||| | |||||| || ||| |||| |||||| | | | |||| | Sbjct 585326 TCTCATGAACAGGTCACATACCCAAAGGGC-ATAGAATAAATCTCTGGCACGAAGTTCTT 585268 Query 63331 CGTTTCCTGTATTCTTTTTA---AGATCGAGGAACGCCATAATATCAGAATGCCACGGTT 63387 | || || || |||||| || || || || || | ||| | |||||| || | Sbjct 585267 CTTTACC---ATGGTTTTTACGCAGGTCCAGAAAACTCAGCACATCTGCATGCCATGGCT 585211 Query 63388 CCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGG 63447 ||| ||| ||||| | | | || ||||| ||| ||||| || | || | |||| Sbjct 585210 CCAGGTAAATGGCAAAAGCACCTTTACGTTTACCTCCACCCTGGTCCACATAACGGGCGG 585151 Query 63448 TGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGA 63507 | | ||| | ||| ||||||| || | ||| || || | || || || || | Sbjct 585150 TATCGTTAAATACTTTCAACATAGGTACAATCCCATTGCTGGTCCCGTTTGTTCCACCAA 585091 Query 63508 TATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAG 63567 |||| ||| ||||||| || ||| || || ||| || || ||||| ||| | Sbjct 585090 TATAAGATCCCGTGGCACGGATGTTATGGATGCTTAAACCAATACCACCTGCGCTTTGTG 585031 Query 63568 AGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGT 63627 | ||| ||| | ||||||| || || || || ||||| || || || || |||| Sbjct 585030 AAATTTTAGCGGTTTGTTTTAAAGTATCGTAAATTCCTTCAATACTGTCGTCCTGCATGG 584971 Query 63628 TAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAG 63687 | |||| ||| ||| ||||||||| | || || | ||||||||||| || || | Sbjct 584970 TCAGTAAAAAGCAGGAAGACATTTGAGGTTTAGGGGTAGCTGCATTAAATAAAGTTGGGG 584911 Query 63688 AAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATAT 63747 || ||||||||||| ||| | || || ||||| |||| || || |||| Sbjct 584910 TTGCATGCGTAAACCAGCGCTCACTCATCAGGTTATACGTTGCAATCGCACTTTCAATAT 584851 Query 63748 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTT 63807 | || ||||| ||||| || |||||||| |||| || || || | ||| ||||||| Sbjct 584850 CTTCTTTGTGAATCCCTACGGCAACACGCATAAACAAATGTTGCGGGCGTTCTACAATTT 584791 Query 63808 TGTTGTT-TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 63866 || || |||||||| || ||||||||||| | |||||||| |||||||| | | || Sbjct 584790 -GTCCTTCTATTTTCAGCAGATAGGATTTTTCAAGGGTTTTAAACCCAAAATAATCGAAT 584732 Query 63867 GAAAAGTCTCGTTCGTAAATAAT-------AACCGAATTGAGCTTATCCTTATATTTGTT 63919 ||| || | || |||||||| | |||| || | || | |||| | Sbjct 584731 CCAAAATCCCTGTCATAAATAATGGTGCTGTCCAGAAT----CTCTGCATTTTCTTTGAT 584676 Query 63920 AAC--TATATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTA 63977 || | ||| || || ||| | | || | ||| | |||| | || Sbjct 584675 CACCTCCCAAACATCGT-----CTGCAATCAGTGAAGCAGATTTGTCTGTTTTGGAATCC 584621 Query 63978 ACATAGTTGAATAAATC--CTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTA 64035 |||||||| ||| | | |||||| || || ||| | || | |||||| | Sbjct 584620 ACATAGTT--ATACAGCATCTCCATGGTTTTGGAGAAAGATTTCGTGGTGTTCTTGTGCA 584563 Query 64036 GATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAG 64095 |||| |||| || || | || || | | |||||||| ||||| | || || | Sbjct 584562 GATTAGATACCGCAATACGGGAAGCCAATAATGCATAATCAGGATGCTTGGTGGTCAGCG 584503 Query 64096 TGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTC 64155 ||||| |||| || ||||| | |||| |||| || ||||| |||| || | | Sbjct 584502 AAGCTGCCGTTTCCGCAGCCAGGTTATCCAGTTCTGAGGTGGTTACCCCATCGTACAAAC 584443 Query 64156 CTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGC 64215 ||| ||| ||||| | || | | ||| ||||| | | || | || |||||||||| Sbjct 584442 CTTCAATTACCTTTTTCGCCACATCAATCGGATCCACCAGTTCTGCATTAAAGCCATAGC 584383 Query 64216 ACAATTTTCTAATACGAGACGTGATTTTATCAAA 64249 | | ||| |||||| | || |||||||| || Sbjct 584382 AGAGCTTTTCAATACGGGCGGTTATTTTATCGAA 584349 Score = 248 bits (274), Expect = 1e-60 Identities = 583/876 (67%), Gaps = 7/876 (1%) Strand=Plus/Minus Query 33289 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATAT 33348 ||||||| || |||||||||||||| || || ||||| ||||| |||| || || || Sbjct 584135 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 584076 Query 33349 TTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAA 33408 | ||||| ||||||||||||||||| ||| || ||||| || | |||| ||| | Sbjct 584075 TCTCCATAAAATCAAACGGATTGGTGGCATGATATATTTTGGTATAACCCAGTTCCTGCA 584016 Query 33409 TCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGA 33468 | |||| ||||| || || || ||||| | ||||| || |||||| || || | Sbjct 584015 GCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATCA 583956 Query 33469 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528 | ||| || | || | |||| |||||| | ||| || |||||| | |||| Sbjct 583955 GGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGATAA 583896 Query 33529 TAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGA 33588 | |||| ||| | ||| || || | | |||| | | || || || | Sbjct 583895 TTCCATGAACGACTTCCTGGCTCAGTTTATTTTTGAGCATTTTATAAAGCAGGCAGGCAA 583836 Query 33589 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCA 33648 | || || |||| ||||| ||||| ||| || || ||| ||| || || || |||| Sbjct 583835 ATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCCTGGCA 583776 Query 33649 TTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTT 33708 | ||||| | ||||| | ||| || || ||| ||| ||| ||||| || |||| Sbjct 583775 TCAGGCCTCTTTTTTTCAACCAGAAGATCGAACAGAAGCTCCCGCTGAAGAAAATGCCTT 583716 Query 33709 CTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTT 33768 | ||||| || || || | | | || || || ||| ||| ||||| Sbjct 583715 CCACTGCGGCGAAAGCCACCAAACGTTCGGCAAAATTTCCGCCCTCA---ATCCAGCGCA 583659 Query 33769 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 33828 ||||| || || || || ||||||||||| | ||| |||| ||||| || || || Sbjct 583658 ATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGAACAGCCTGT 583599 Query 33829 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAA 33888 |||||| | | |||||||| ||| |||||||||| || ||| |||| || || | Sbjct 583598 CTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTTTCAGAGTGGA 583539 Query 33889 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTG 33948 ||||||| || ||||| || || || ||||| | || |||| || ||| ||||| | Sbjct 583538 TGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGCTGTACTTC-G 583480 Query 33949 TACAAAATCGTT--CTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGC 34006 || | ||| |||| | |||||||| || || || ||||| || |||||||| || Sbjct 583479 CTCATGA-AGTTCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCAAAAAAAGC 583421 Query 34007 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 34066 | || ||| || |||| ||| ||| ||| || | ||| | || || Sbjct 583420 AAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCCAGTGCTTCTGGTC 583361 Query 34067 TTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT 34126 | ||| | || | |||||| | ||||| || ||| || ||| |||||||| | Sbjct 583360 ATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCACTCTTCTTATACATTTC 583301 Query 34127 CCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 |||||| ||| | |||| || || |||| |||||| Sbjct 583300 CCAGATTTCAGGGTATTTAATAGGCAAAAGAACAAA 583265 >seq1288 Length=22276 Score = 138 bits (152), Expect = 1e-27 Identities = 254/370 (69%), Gaps = 2/370 (1%) Strand=Plus/Minus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 || ||| || || |||||||| || |||||||| | || || | ||||| || || || Sbjct 677 CAGACAGGCAAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCAGCTCGTTCGAGAAGGT 618 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 ||| ||| |||| ||||| ||||| || ||||| || || || ||| || || || || Sbjct 617 GAGGCCGTGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGCCCGAGAA 558 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT-GTCAT 33756 |||||| || || || || ||||| || | || | ||| || || | |||| || | Sbjct 557 GAAGATGCCCTCGACGGCGGCAAACGCGACGAGGCGCTCGGCA-AAGCTGCGCGAGTTTT 499 Query 33757 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33816 ||||| ||||| ||||||||||| || || ||||| || ||||| | Sbjct 498 CGATCCAGCGGATCGCCCACTCGGCCTTCTTGCGCACGGCGGGGATCGTCTCGATGGCGT 439 Query 33817 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 33876 | ||||| | | || | || || | || || ||||||| ||||| ||| Sbjct 438 TGAAGAGCTGGGCCTTGCGCGCGGTGTCCTTGATGTAGGTGTCGATCAGCAGACTGTACG 379 Query 33877 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33936 | || || || |||||||| ||||| || || || |||||||| || | ||||||| | Sbjct 378 TCTCGGAGTGGATGTTTTCGATGGCGATTTGGAAGCCGTAGAAGCAGCGCGCCTCGGGGA 319 Query 33937 TCTGCACTTC 33946 | ||||| || Sbjct 318 TTTGCACCTC 309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629736298420560